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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatacctgttcacctaattctagtttagttgtatatatctttcttgttctttctattaatttattaaatttgagctagacaacagaagctagcagttaaggtaaaaaatcctccagcatgtcactgaaggatttttcatttttattcagGTCCTACCTATCTCCTTCAGATATAATGAGAAACCAGCCACATCTTCTAGTTATTGGAACTGGTTTTGCATTTGGCTTTCTTGTG

Basic information

species Oryza sativa
transcript LOC_Os02g02750.2
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g02750.3 (Oryza sativa), 3'ss of exon 12
lower sequence: GRMZM2G466281_T01 (Zea mays), 3'ss of exon 12
gtatacctgttcacctaattctagtttagtt---gtatatatctttcttgttctttctattaatttattaaatttgagctagacaacagaagctagcagtta-aggtaaaaaatcctccagcatgt--cactgaaggatttttcatttttattcagGTCCTACCTATCTCCTTCAGATATAATGAGAAACCAGCCACATCTTCTAGTTATTGGAACTGGTTTTGCATTTGGCTTTCTTGTG
|||   || || |    |  || | ||  ||   || |||    || |   ||  ||||  ||      |||||||| || | |||       |   || || | ||  |  | |||| || ||||  ||||||| ||| || ||||||||| |||||||||||| |||||||||||||||||||||| ||| |||||| | ||| ||||||||||||||||||||||||| |||||||||
gtaagtcttttga---gacccttgcttgcttcacgtgtatgcagttatgcatcactctaccaa-----gaaatttgaactgggcaatcagcaatcttagctacaagtttagtagcctctagtatgtatcactgaatgatattgcatttttatgcagGTCCTACCTTTCTCCTTCAGATATAATGAGAACCCAACCACATTTGCTAATTATTGGAACTGGTTTTGCATTTGGATTTCTTGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33803550|gb|CF327650.1|CF327650
EST:     CTCTTTCCTTTTGGTTTGCTGTTGGCCGGAGTTCTTGTCTG                         GTCCTACCTATCTCCTTCAGATATAATGAGAAACCAGCCACATCTTCTAGT
genomic: CTCTTTCCTTTTGGTTTGCTGTTGGCCGGAGTTCTTGTCTGgtatacctgt ... ttttattcagGTCCTACCTATCTCCTTCAGATATAATGAGAAACCAGCCACATCTTCTAGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttaaggtaaaaaatcctccagcatgtcactgaaggatttttcatttttattcagGTCCTACCTATCTCCTTCAGATATAATGAGAAACCAGCCACATCTTCTAGTTATTGGAACTGGTTTTGCATTTGGCTTTCTTGTG
                                     tttttcatttttattc  CT-rich tract
                                    atttttcatttttatt  TA-rich tract