1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaacatttttgactcctgaaaacccataaaaaggaatagattgaagctcgctgttcagtttgagtttcggatttggttgtggcaagagtgatcaccatttgttgcctcagATGAACAAAGTGCATGAACCATTCGAACTTTGGAGGAAACTTATGCGGTTTACCGCTTGGAGATCCACCGATTTGGGAGGCGACATGGCTGGCAGAGTTC
species | Oryza sativa |
transcript | LOC_Os02g02710.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GATGTTCATGTTCTGTTCGAGGATATCAAAGAACAGGAACAGAGAAACAG ATGAACAAAGTGCATGAACCATTCGAACTTTGGAGGAAACTTATGCGGTTTEST: gi|88381454|gb|CI528434.1|CI528434
genomic: GATGTTCATGTTCTGTTCGAGGATATCAAAGAACAGGAACAGAGAAACAGgtaacatttt ... gttgcctcagATGAACAAAGTGCATGAACCATTCGAACTTTGGAGGAAACTTATGCGGTTT
EST: GATGTTCATGTTCTGTTCGAGGATATCAAAGAACAGGAACAGAGAAACAG ATGAACAAAGTGCATGAACCATTCGAACTTTGGAGGAAACTTATGCGGTTTEST: gi|88830041|gb|CI074713.1|CI074713
genomic: GATGTTCATGTTCTGTTCGAGGATATCAAAGAACAGGAACAGAGAAACAGgtaacatttt ... gttgcctcagATGAACAAAGTGCATGAACCATTCGAACTTTGGAGGAAACTTATGCGGTTT
EST: GATGTTCATGTTCTGTTCGAGGATATCAAAGAACAGGAACAGAGAAACAG ATGAACAAAGTGCATGAACCATTCGAACTTTGGAGGAAACTTATGCGGTTTEST: gi|88259148|gb|CI363441.1|CI363441
genomic: GATGTTCATGTTCTGTTCGAGGATATCAAAGAACAGGAACAGAGAAACAGgtaacatttt ... gttgcctcagATGAACAAAGTGCATGAACCATTCGAACTTTGGAGGAAACTTATGCGGTTT
EST: GATGTTCATGTTCTGTTCGAGGATATCAAAGAACAGGAACAGAGAAACAG ATGAACAAAGTGCATGAACCATTCGAACTTTGGAGGAAACTTATTCGGTTTEST: gi|89163885|gb|CI100973.1|CI100973
genomic: GATGTTCATGTTCTGTTCGAGGATATCAAAGAACAGGAACAGAGAAACAGgtaacatttt ... gttgcctcagATGAACAAAGTGCATGAACCATTCGAACTTTGGAGGAAACTTATGCGGTTT
EST: GATGTTCATGTTCTGTTCGAGGATATCAAAGAACAGGAACAGAGAAACAG ATGAACAAAGTGCATGAACCATTCGAACTTTGGAGGAAACTTATGCGGTTTEST: gi|29644785|gb|CB649792.1|CB649792
genomic: GATGTTCATGTTCTGTTCGAGGATATCAAAGAACAGGAACAGAGAAACAGgtaacatttt ... gttgcctcagATGAACAAAGTGCATGAACCATTCGAACTTTGGAGGAAACTTATGCGGTTT
EST: GATGTTCATGTTCTGTTCGAGGATATCAAAGAACAGGAACAGAGAAACAG ATGAACAAAGTGCATGAACCATTCGAACTTTGGAGGAAACTTATGCGGTTT
genomic: GATGTTCATGTTCTGTTCGAGGATATCAAAGAACAGGAACAGAGAAACAGgtaacatttt ... gttgcctcagATGAACAAAGTGCATGAACCATTCGAACTTTGGAGGAAACTTATGCGGTTT
cagtttgagtttcggatttggttgtggcaagagtgatcaccatttgttgcctcagATGAACAAAGTGCATGAACCATTCGAACTTTGGAGGAAACTTATGCGGTTTACCGCTTGGAGATCCACCGATTTGGGAGGCGACATGGCTGGCAGAGTTC
ttgcctc CT-rich tract
atttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacatttttgactcctgaaaacccataaaaaggaatagattgaagctcgctgttcagtttgagtttcggatttggttgtggcaagagtgatcaccatttgttgcctcagATGAACAAAGTGCATGAACCATTCGAACTTTGGAGGAAACTTATGCGGTTTACCGCTTGGAGATCCACCGATTTGGGAGGCGACATGGCTGGCAGAGTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC