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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaaaaatatggaaatgaaaatgtgtaataatagggagagaaatgagcgatgtattaattcactgtacattgtattgtggctttgatttacagATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTGGGGACATACTCATCCCTCTCCAAGATTATCCAGAACTACACCTGACCTG

Basic information

species Oryza sativa
transcript LOC_Os02g01100.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g01100.1 (Oryza sativa), 3'ss of exon 11
lower sequence: GRMZM2G134888_T01 (Zea mays), 3'ss of exon 11
----gtacaaaaatatggaaatgaaaatgtgtaataatagggagagaaatgagcgatgtattaattcactgtacattgtattgtggct--ttgatttacagATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTGGGGACATACTCATCCCTCTCCAAGATTATCCAGAACTACACCTGACCTG
     || | | | |||  | ||    |  || |  |   |       | ||    |  | |  | || | || | || |  |   ||  ||||||  ||||| ||||||||||| |||||||| || || ||||||||||| || | |||||| |||||||| ||||| || ||||| |||||||||||| | |  |   
ttatataaatagacatgctattgtttttaagtgaacactagacacactacgaaatgtagaattgtgcattctatactg-accgcatctgtttgattcgcagATAGCAGCTTGCTCGTTCATCATAGTTGTCGGGGTTTGCTGTGCCTACGTGGGAACATACTCGTCCCTGTCGAAGATAATCCAGAACTACGCATAGCACA

upper sequence: LOC_Os02g01100.1 (Oryza sativa), 3'ss of exon 11
lower sequence: GRMZM2G105192_T03 (Zea mays), 3'ss of exon 10
--------------------------------------------------------------------gtacaaaaatatggaaatgaaaatgtgtaataatagggagaga--aatgagcgatgtattaattcactgtacattg-------tattgtggcttt----gatttacagATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTGGGGACATACTCATCCCTCTCCAAGATTATCCAGAACTACACCTGACCTG
                                                                    |||    |     ||     |  ||  |   || | ||    |  ||||  |  |   | | ||  |   |   |        || || | |||     |||   ||| | ||||  ||||| |||||||||||||| ||||||||||||||||| ||||| |||||||| || || || ||||| |||||||||||||| |||    
gtatgtatatttgcaattaatacttaccagagttgcattgtttcgttaacaaataagcagagatgtcagtatcctacctaagatgctgatttgctttgaaacatggtagaactaatgctctgtccctcactttgcgtcatgctaatgctattaatgggacttctttcgatcggcagGTAGCAGTATGCTCGTTCATCATCGTGGTTGGGGTTTGCTGCGCTTGTGTGGGAACATACTCGTCTCTGTCAAAGATAATCCAGAACTACACATGATACA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88266546|gb|CI377448.1|CI377448
EST:     CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAG                         ATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
genomic: CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAGgtacaaaaat ... tgatttacagATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
EST: gi|86498766|gb|CI141399.1|CI141399
EST:     CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAG                         ATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
genomic: CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAGgtacaaaaat ... tgatttacagATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
EST: gi|88484073|gb|CI421344.1|CI421344
EST:     CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAG                         ATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
genomic: CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAGgtacaaaaat ... tgatttacagATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
EST: gi|88516600|gb|CI444254.1|CI444254
EST:     CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAG                         ATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
genomic: CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAGgtacaaaaat ... tgatttacagATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
EST: gi|88991353|gb|CI034688.1|CI034688
EST:     CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAG                         ATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
genomic: CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAGgtacaaaaat ... tgatttacagATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
EST: gi|88489526|gb|CI426798.1|CI426798
EST:     CATGCGCCTGTTTCTTGNCCATCCTTAAGAGAAAAGTGACTTGGCATCAG                         ATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
genomic: CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAGgtacaaaaat ... tgatttacagATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
EST: gi|58686741|gb|CK075428.1|CK075428
EST:     CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAG                         ATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
genomic: CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAGgtacaaaaat ... tgatttacagATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
EST: gi|88515198|gb|CI442852.1|CI442852
EST:     CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAG                         ATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
genomic: CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAGgtacaaaaat ... tgatttacagATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
EST: gi|88284203|gb|CI405649.1|CI405649
EST:     CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAG                         ATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
genomic: CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAGgtacaaaaat ... tgatttacagATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
EST: gi|88470483|gb|CI407754.1|CI407754
EST:     CATGCCCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAG                         ATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
genomic: CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAGgtacaaaaat ... tgatttacagATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
EST: gi|27548100|gb|CA766182.2|CA766182
EST:     CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAG                         ATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
genomic: CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAGgtacaaaaat ... tgatttacagATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
EST: gi|88272468|gb|CI386323.1|CI386323
EST:     CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAG                         ATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
genomic: CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAGgtacaaaaat ... tgatttacagATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
EST: gi|40494256|gb|BX901140.1|BX901140
EST:     CATGCGCCTGTTTCTTGCCCATCCTTAAGAGAAAAGTGACTTGGCATCAG                         ATTGCAGCTTGCTCATTCATGATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
genomic: CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAGgtacaaaaat ... tgatttacagATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
EST: gi|88544177|gb|CI474251.1|CI474251
EST:     CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAG                         ATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
genomic: CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAGgtacaaaaat ... tgatttacagATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
EST: gi|88275672|gb|CI396276.1|CI396276
EST:     CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAG                         ATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
genomic: CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAGgtacaaaaat ... tgatttacagATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
EST: gi|29659581|gb|CB655856.1|CB655856
EST:     CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAG                         ATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
genomic: CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAGgtacaaaaat ... tgatttacagATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
EST: gi|89167449|gb|CI038956.1|CI038956
EST:     CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAG                         ATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
genomic: CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAGgtacaaaaat ... tgatttacagATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
EST: gi|89168324|gb|CI109528.1|CI109528
EST:     CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAG                         ATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
genomic: CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAGgtacaaaaat ... tgatttacagATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
EST: gi|29678444|gb|CB674719.1|CB674719
EST:     CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAG                         ATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
genomic: CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAGgtacaaaaat ... tgatttacagATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
EST: gi|88253485|gb|CI352111.1|CI352111
EST:     CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAG                         A-TGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
genomic: CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAGgtacaaaaat ... tgatttacagATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
EST: gi|88992255|gb|CI035393.1|CI035393
EST:     CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAG                         ATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
genomic: CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAGgtacaaaaat ... tgatttacagATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
EST: gi|29663318|gb|CB659593.1|CB659593
EST:     CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAG                         ATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
genomic: CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAGgtacaaaaat ... tgatttacagATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
EST: gi|88980182|gb|CI026471.1|CI026471
EST:     CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAG                         ATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
genomic: CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAGgtacaaaaat ... tgatttacagATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
EST: gi|88274864|gb|CI388322.1|CI388322
EST:     CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAG                         ATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
genomic: CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAGgtacaaaaat ... tgatttacagATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
EST: gi|88840439|gb|CI079893.1|CI079893
EST:     CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTGGGCATCAG                         ATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
genomic: CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAGgtacaaaaat ... tgatttacagATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaaatgagcgatgtattaattcactgtacattgtattgtggctttgatttacagATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTGGGGACATACTCATCCCTCTCCAAGATTATCCAGAACTACACCTGACCTG
           atgtattaatt  TA-rich tract