1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtattgtattttgatttatttattaaatacaattcactgtttgtttttcatacgtatgatattttctataaaattaatattcaactgatatgcgcagATTGTACAAAGCTTATCAAAAATTGTATGCTTCCATGCATGATAAAGCAACTGGTCCACATAAAACCCAATTCAGAAGAGATGAAGATTATG
species | Oryza sativa |
transcript | LOC_Os01g74460.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GTATCATCTGAGTTCCCCTTAATCATAAGCAATCCAAAGCAACAGAAAAG ATTGTACAAAGCTTATCAAAAATTGTATGCTTCCATGCATGATAAAGCAACEST: gi|87029236|gb|CI276504.1|CI276504
genomic: GTATCATCTGAGTTCCCCTTAATCATAAGCAATCCAAAGCAACAGAAAAGgtattgtatt ... atatgcgcagATTGTACAAAGCTTATCAAAAATTGTATGCTTCCATGCATGATAAAGCAAC
EST: GTATCATCTGAGTTCCCCTTAATCATAAGCAATCCAAAGCAACAGAAAAG ATTGTACAAAGCTTATCAAAAATTGTATGCTTCCATGCATGATAAAGCAACEST: gi|86861206|gb|CI326645.1|CI326645
genomic: GTATCATCTGAGTTCCCCTTAATCATAAGCAATCCAAAGCAACAGAAAAGgtattgtatt ... atatgcgcagATTGTACAAAGCTTATCAAAAATTGTATGCTTCCATGCATGATAAAGCAAC
EST: TTCCCCTTAATCATAAGCAATCCAAAGCAACAGAAAAG ATTGTACAAAGCTTATCAAAAATTGTATGCTTCCATGCATGATAAAGCAAC
genomic: TTCCCCTTAATCATAAGCAATCCAAAGCAACAGAAAAGgtattgtatt ... atatgcgcagATTGTACAAAGCTTATCAAAAATTGTATGCTTCCATGCATGATAAAGCAAC
gtttttcatacgtatgatattttctataaaattaatattcaactgatatgcgcagATTGTACAAAGCTTATCAAAAATTGTATGCTTCCATGCATGATAAAGCAACTGGTCCACATAAAACCCAATTCAGAAGAGATGAAGATTATG
aactgat putative branch site (score: 3)
tatgatattttctata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgtattttgatttatttattaaatacaattcactgtttgtttttcatacgtatgatattttctataaaattaatattcaactgatatgcgcagATTGTACAAAGCTTATCAAAAATTGTATGCTTCCATGCATGATAAAGCAACTGGTCCACATAAAACCCAATTCAGAAGAGATGAAGATTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA