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gtaaagtccatcctcccgtcaatgctacgggcttcatggcttgttgcgacaagcttgatttagttgcaaaccacatacagttactaaatttcatgttgattgtttagGTTATCAGCAAAGTTGGTGACCTCGTGGGAATCAAATACTTCCCAGTGGAACATGAAAAGACTGCATCTGTTGAGAAACTGAAGAAGCTTCAATGAACAC
species | Oryza sativa |
transcript | LOC_Os01g70380.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TATGTATCTCAGCTTCCCACTCAAGGGAAGATCTTATTAAAGGATTGGAG GTTATCAGCAAAGTTGGTGACCTCGTGGGAATCAAATACTTCCCAGTGGAAEST: gi|29615290|gb|CB620302.1|CB620302
genomic: TATGTATCTCAGCTTCCCACTCAAGGGAAGATCTTATTAAAGGATTGGAGgtaaagtcca ... gattgtttagGTTATCAGCAAAGTTGGTGACCTCGTGGGAATCAAATACTTCCCAGTGGAA
EST: TATGTATCTCAGCTTCCCACTCAAGGGAAGATCTTATTAAAGGATTGGAG GTTATCAGCAAAGTTGGTGACCTCGTGGGAATCAAATACTTCCCAGTGGAAEST: gi|86505007|gb|CI147640.1|CI147640
genomic: TATGTATCTCAGCTTCCCACTCAAGGGAAGATCTTATTAAAGGATTGGAGgtaaagtcca ... gattgtttagGTTATCAGCAAAGTTGGTGACCTCGTGGGAATCAAATACTTCCCAGTGGAA
EST: TATGTATCTCAGCTTCCCACTCAAGGGAAGATCTTATTAAAGGATTGGAG GTTATCAGCAAAGTTGGTGACCTCGTGGGAATCAAATACTTCCCCAGTGGAEST: gi|27547517|gb|CA765770.2|CA765770
genomic: TATGTATCTCAGCTTCCCACTCAAGGGAAGATCTTATTAAAGGATTGGAGgtaaagtcca ... gattgtttagGTTATCAGCAAAGTTGGTGACCTCGTGGGAATCAAATACTTCCC-AGTGGA
EST: TATGTATCTCAGCTTCCCACTCAAGGGAAGATCTTATTAAAGGATTGGAG GTTATCAGCAAAGTTGGTGACCTCGTGGGAATCAAATACTTCCCAGTGGAAEST: gi|88221305|gb|CI221261.1|CI221261
genomic: TATGTATCTCAGCTTCCCACTCAAGGGAAGATCTTATTAAAGGATTGGAGgtaaagtcca ... gattgtttagGTTATCAGCAAAGTTGGTGACCTCGTGGGAATCAAATACTTCCCAGTGGAA
EST: TATGTATCTCAGCTTCCCACTCAAGGGAAGATCTTATTAAAGGATTGGAG GTTATCAGCAAAGTTGGTGACCTCGTGGGAATCAAATACTTCCCAGTGGAAEST: gi|27576223|gb|CA998917.1|CA998917
genomic: TATGTATCTCAGCTTCCCACTCAAGGGAAGATCTTATTAAAGGATTGGAGgtaaagtcca ... gattgtttagGTTATCAGCAAAGTTGGTGACCTCGTGGGAATCAAATACTTCCCAGTGGAA
EST: TATGTATCTCAGCTTCCCACTCAAGGGAAGATCTTATTAAAGGATTGGAG GTTATCAGCAAAGTTGGTGACCTCGTGGGAATCAAATACTTCCCAGTGGAAEST: gi|86431620|gb|CI085231.1|CI085231
genomic: TATGTATCTCAGCTTCCCACTCAAGGGAAGATCTTATTAAAGGATTGGAGgtaaagtcca ... gattgtttagGTTATCAGCAAAGTTGGTGACCTCGTGGGAATCAAATACTTCCCAGTGGAA
EST: TATGTATCTCAGCTTCCCACTCAAGGGAAGATCTTATTAAAGGATTGGAG GTTATCAGCAAAGTTGGTGACCTCGTGGGAATCAAATACTTCCCAGTGGAAEST: gi|88221059|gb|CI221015.1|CI221015
genomic: TATGTATCTCAGCTTCCCACTCAAGGGAAGATCTTATTAAAGGATTGGAGgtaaagtcca ... gattgtttagGTTATCAGCAAAGTTGGTGACCTCGTGGGAATCAAATACTTCCCAGTGGAA
EST: GGGAAGATCTTATTAAAGGATTGGAG GTTATCAGCAAAGTTGGTGACCTCGTGGGAATCAAATACTTCCCAGTGGAAEST: gi|88288746|gb|CI517877.1|CI517877
genomic: GGGAAGATCTTATTAAAGGATTGGAGgtaaagtcca ... gattgtttagGTTATCAGCAAAGTTGGTGACCTCGTGGGAATCAAATACTTCCCAGTGGAA
EST: TATGTATCTCAGCTTCCCACTCAAGGGAAGATCTTATTAAAGGATTGGAG GTTATCAGCAAAGTTGGTGACCTCGTGGGAATCAAATACTTCCCAGTGGAAEST: gi|88248025|gb|CI246643.1|CI246643
genomic: TATGTATCTCAGCTTCCCACTCAAGGGAAGATCTTATTAAAGGATTGGAGgtaaagtcca ... gattgtttagGTTATCAGCAAAGTTGGTGACCTCGTGGGAATCAAATACTTCCCAGTGGAA
EST: TATGTATCTCAGCTTCCCACTCAAGGGAAGATCTTATTAAAGGATTGGAG GTTATCAGCAAAGTTGGTGACCTCGTGGGAATCAAATACTTCCCAGTGGAAEST: gi|27578092|gb|CB000787.1|CB000787
genomic: TATGTATCTCAGCTTCCCACTCAAGGGAAGATCTTATTAAAGGATTGGAGgtaaagtcca ... gattgtttagGTTATCAGCAAAGTTGGTGACCTCGTGGGAATCAAATACTTCCCAGTGGAA
EST: TATGTATCTCAGCTTCCCACTCAAGGGAAGATCTTATTAAAGGATTGGAG GTTATCAGCAAAGTTGGTGACCTCGTGGGAATCAAATACTTCCCAGTGGAAEST: gi|88848490|gb|CI087012.1|CI087012
genomic: TATGTATCTCAGCTTCCCACTCAAGGGAAGATCTTATTAAAGGATTGGAGgtaaagtcca ... gattgtttagGTTATCAGCAAAGTTGGTGACCTCGTGGGAATCAAATACTTCCCAGTGGAA
EST: TATGTATCTCAGCTTCCCACTCAAGGGAAGATCTTATTAAAGGATTGGAG GTTATCAGCAAAGTTGGTGACCTCGTGGGAATCAAATACTTCCCAGTGGAAEST: gi|86498588|gb|CI141221.1|CI141221
genomic: TATGTATCTCAGCTTCCCACTCAAGGGAAGATCTTATTAAAGGATTGGAGgtaaagtcca ... gattgtttagGTTATCAGCAAAGTTGGTGACCTCGTGGGAATCAAATACTTCCCAGTGGAA
EST: TATGTATCTCAGCTTCCCACTCAAGGGAAGATCTTATTAAAGGATTGGAG GTTATCAGCAAAGTTGGTGACCTCGTGGGAATCAAATACTTCCCAGTGGAAEST: gi|89174439|gb|CI110637.1|CI110637
genomic: TATGTATCTCAGCTTCCCACTCAAGGGAAGATCTTATTAAAGGATTGGAGgtaaagtcca ... gattgtttagGTTATCAGCAAAGTTGGTGACCTCGTGGGAATCAAATACTTCCCAGTGGAA
EST: TATGTATCTCAGCTTCCCACTCAAGGGAAGATCTTATTAAAGGATTGGAG GTTATCAGCAAAGTTGGTGACCTCGTGGGAATCAAATACTTCCCAGTGGAAEST: gi|89185946|gb|CI047815.1|CI047815
genomic: TATGTATCTCAGCTTCCCACTCAAGGGAAGATCTTATTAAAGGATTGGAGgtaaagtcca ... gattgtttagGTTATCAGCAAAGTTGGTGACCTCGTGGGAATCAAATACTTCCCAGTGGAA
EST: TATGTATCTCAGCTTCCCACTCAAGGGAAGATCTTATTAAAGGATTGGAG GTTATCAGCAAAGTTGGTGACCTCGTGGGAATCAAATACTTCCCAGTGGAAEST: gi|88291945|gb|CI532537.1|CI532537
genomic: TATGTATCTCAGCTTCCCACTCAAGGGAAGATCTTATTAAAGGATTGGAGgtaaagtcca ... gattgtttagGTTATCAGCAAAGTTGGTGACCTCGTGGGAATCAAATACTTCCCAGTGGAA
EST: TATGTATCTCAGCTTCCCACTCAAGGGAAGATCTTATTAAAGGATTGGAG GTTATCAGCAAAGTTGGTGACCTCGTGGGAATCAAATACTTCCCAGTGGAA
genomic: TATGTATCTCAGCTTCCCACTCAAGGGAAGATCTTATTAAAGGATTGGAGgtaaagtcca ... gattgtttagGTTATCAGCAAAGTTGGTGACCTCGTGGGAATCAAATACTTCCCAGTGGAA
gcttgatttagttgcaaaccacatacagttactaaatttcatgttgattgtttagGTTATCAGCAAAGTTGGTGACCTCGTGGGAATCAAATACTTCCCAGTGGAACATGAAAAGACTGCATCTGTTGAGAAACTGAAGAAGCTTCAATGAACAC
ttactaaatttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagtccatcctcccgtcaatgctacgggcttcatggcttgttgcgacaagcttgatttagttgcaaaccacatacagttactaaatttcatgttgattgtttagGTTATCAGCAAAGTTGGTGACCTCGTGGGAATCAAATACTTCCCAGTGGAACATGAAAAGACTGCATCTGTTGAGAAACTGAAGAAGCTTCAATGAACAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC