1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...cctttcctccggatgaaatcatgtccaaatcgagggctattgtgtactgtaactttgtcatggtgtatctatcttatgcagtccattctttgtcttaaagGAATTGAACAAGGATCTAACGCAAAAGCTGGAGATTCAGACTCACAGACTTGAGCTGTTATCTTCTCAAAGGATGGCTAACGAGAATGTCCTTCCAAAGC
species | Oryza sativa |
transcript | LOC_Os01g68380.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AGTTGCTGCGAGCTTTGAGAATTGAATCATCCAATTGCTCCAAGCTGAAG GAATTGAACAAGGATCTAACGCAAAAGCTGGAGATTCAGACTCACAGACTTEST: gi|86478032|gb|CI120665.1|CI120665
genomic: AGTTGCTGCGAGCTTTGAGAATTGAATCATCCAATTGCTCCAAGCTGAAGgttttgttca ... tgtcttaaagGAATTGAACAAGGATCTAACGCAAAAGCTGGAGATTCAGACTCACAGACTT
EST: AGTTGCTGCGAGCTTTGAGAATTGAATCATCCAATTGCTCCAAGCTGAAG GAATTGAACAAGGATCTAACGCAAAAGCTGGAGATTCAGGCTCACAGACTTEST: gi|86596871|gb|CI270667.1|CI270667
genomic: AGTTGCTGCGAGCTTTGAGAATTGAATCATCCAATTGCTCCAAGCTGAAGgttttgttca ... tgtcttaaagGAATTGAACAAGGATCTAACGCAAAAGCTGGAGATTCAGACTCACAGACTT
EST: AGTTGCTGCGAGCTTTGAGAATTGAATCATCCAATTGCTCCAAGCTGAAG GAATTGAACAAGGATCTAACGCAAAAGCTGGAGATTCAGACTCACAGACTTEST: gi|58674576|gb|CK063263.1|CK063263
genomic: AGTTGCTGCGAGCTTTGAGAATTGAATCATCCAATTGCTCCAAGCTGAAGgttttgttca ... tgtcttaaagGAATTGAACAAGGATCTAACGCAAAAGCTGGAGATTCAGACTCACAGACTT
EST: AGTTGCTGCGAGCTTTGAGAATTGAATCATCCCATTGCTCCAAGCTGAAG GAATTGAACAAGGATCTAACGCCAAAGCTGGAGATTCAGACTCACAGACTTEST: gi|29670331|gb|CB666606.1|CB666606
genomic: AGTTGCTGCGAGCTTTGAGAATTGAATCATCCAATTGCTCCAAGCTGAAGgttttgttca ... tgtcttaaagGAATTGAACAAGGATCTAACGCAAAAGCTGGAGATTCAGACTCACAGACTT
EST: AGTTGCTGCGAGCTTTGAGAATTGAATCATCCAATTGCTCCAAGCTGAAG GAATTGAACAAGGATCTAACGCAAAAGCTGGAGATTCAGACTCACAGACTTEST: gi|87014864|gb|CI271463.1|CI271463
genomic: AGTTGCTGCGAGCTTTGAGAATTGAATCATCCAATTGCTCCAAGCTGAAGgttttgttca ... tgtcttaaagGAATTGAACAAGGATCTAACGCAAAAGCTGGAGATTCAGACTCACAGACTT
EST: AGTTGCTGCGAGCTTTGAGAATTGAATCATCCAATTGCTCCAAGCTGAAG GAATTGAACAAGGATCTAACGCAAAAGCTGGAGATTCAGACTCACAGACTTEST: gi|29672335|gb|CB668610.1|CB668610
genomic: AGTTGCTGCGAGCTTTGAGAATTGAATCATCCAATTGCTCCAAGCTGAAGgttttgttca ... tgtcttaaagGAATTGAACAAGGATCTAACGCAAAAGCTGGAGATTCAGACTCACAGACTT
EST: AGTTGCTGCGAGCTTTGAGAATTGAATCATCCAATTGCTCCAAGCTGAAG GAATTGAACAAGGATCTAACGCAAAAGCTGGAGATTCAGACTCACAGACTTEST: gi|58682563|gb|CK071250.1|CK071250
genomic: AGTTGCTGCGAGCTTTGAGAATTGAATCATCCAATTGCTCCAAGCTGAAGgttttgttca ... tgtcttaaagGAATTGAACAAGGATCTAACGCAAAAGCTGGAGATTCAGACTCACAGACTT
EST: AGTTGCTGCGAGCTTTGAGAATTGAATCATCCAATTGCTCCAAGCTGAAG GAATTGAACAAGGATCTAACGCAAAAGCTGGAGATTCAGACTCACAGACTTEST: gi|66924680|gb|CX111528.1|CX111528
genomic: AGTTGCTGCGAGCTTTGAGAATTGAATCATCCAATTGCTCCAAGCTGAAGgttttgttca ... tgtcttaaagGAATTGAACAAGGATCTAACGCAAAAGCTGGAGATTCAGACTCACAGACTT
EST: AGTTGCTGCGAGCTTTGAGAATTGAATCATCCAATTGCTCCAAGCTGAAG GAATTGAACAAGGATCEST: gi|29644364|gb|CB649371.1|CB649371
genomic: AGTTGCTGCGAGCTTTGAGAATTGAATCATCCAATTGCTCCAAGCTGAAGgttttgttca ... tgtcttaaagGAATTGAACAAGGATC
EST: AGTTGCTGCGAGCTTTGAGAATTGAATCATCCAATTGCTCCAAGCTGAAG GAATTGAACAAGGATCTAACGCAAAAGCTGGAGATTCAGACTCACAGACTTEST: gi|29668123|gb|CB664398.1|CB664398
genomic: AGTTGCTGCGAGCTTTGAGAATTGAATCATCCAATTGCTCCAAGCTGAAGgttttgttca ... tgtcttaaagGAATTGAACAAGGATCTAACGCAAAAGCTGGAGATTCAGACTCACAGACTT
EST: AGTTGCTGCGAGCTTTGAGAATTGAATCATCCAATTGCTCCAAGCTGAAG GAATTGAACAAGGATCTAACGCAAAAGCTGGAGATTCAGACTCACAGACTT
genomic: AGTTGCTGCGAGCTTTGAGAATTGAATCATCCAATTGCTCCAAGCTGAAGgttttgttca ... tgtcttaaagGAATTGAACAAGGATCTAACGCAAAAGCTGGAGATTCAGACTCACAGACTT
actgtaactttgtcatggtgtatctatcttatgcagtccattctttgtcttaaagGAATTGAACAAGGATCTAACGCAAAAGCTGGAGATTCAGACTCACAGACTTGAGCTGTTATCTTCTCAAAGGATGGCTAACGAGAATGTCCTTCCAAAGC
ctgtaac putative branch site (score: 3)
tccattctttgtctt putative PPT
tatcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctttcctccggatgaaatcatgtccaaatcgagggctattgtgtactgtaactttgtcatggtgtatctatcttatgcagtccattctttgtcttaaagGAATTGAACAAGGATCTAACGCAAAAGCTGGAGATTCAGACTCACAGACTTGAGCTGTTATCTTCTCAAAGGATGGCTAACGAGAATGTCCTTCCAAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG