1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...cataacattattagttcactgagtctctctcgtttacgtttctgtaatttaactatgcaccatatgattgctatctgaaaataaattcgtgttgtcacagGTATTGCATTGCAACTATCAGACGATTCATCCTGTGAGACTGTATATAAACGAGCACTCATCCTGTCTTCAAGCCAGCAGTCGTATGCAATCCTCTCCAA
species | Oryza sativa |
transcript | LOC_Os01g67920.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AGCTGCTGTAGCTCGTTCGCCAGATTGCAGCTATGTGTGGTCAAATCTTG GTATTGCATTGCAACTATCAGACGATTCATCCTGTGAGACTGTATATAAACEST: gi|14571444|gb|BI118812.1|BI118812
genomic: AGCTGCTGTAGCTCGTTCGCCAGATTGCAGCTATGTGTGGTCAAATCTTGgtaagttttg ... gttgtcacagGTATTGCATTGCAACTATCAGACGATTCATCCTGTGAGACTGTATATAAAC
EST: AGCTGCTGTAGCTCGTTCGCCAGATTGCAGCTATGTGTGGTCAAATCTTG GTATTGCATTGCAACTATCAGACGATTCATCCTGTGAGACTGTATATAAACEST: gi|58612799|gb|CK040511.1|CK040511
genomic: AGCTGCTGTAGCTCGTTCGCCAGATTGCAGCTATGTGTGGTCAAATCTTGgtaagttttg ... gttgtcacagGTATTGCATTGCAACTATCAGACGATTCATCCTGTGAGACTGTATATAAAC
EST: AGCTGCTGTAGCTCGTTCGGGGGATTGCAGCTATGTGTGGTCCAATCTTG GTATTGCATTGCAACTATCAGACGATTCATCCTGTGAGACTGTATATAAACEST: gi|29641528|gb|CB646535.1|CB646535
genomic: AGCTGCTGTAGCTCGTTCGCCAGATTGCAGCTATGTGTGGTCAAATCTTGgtaagttttg ... gttgtcacagGTATTGCATTGCAACTATCAGACGATTCATCCTGTGAGACTGTATATAAAC
EST: AGCTGCTGTAGCTCGTTCGCCAGATTGCAGCTATGTGTGGTCAAATCTTG GTATTGCATTGCAACTATCAGACGATTCATCCTGTGAGACTGTATATAAACEST: gi|58663420|gb|CK052106.1|CK052106
genomic: AGCTGCTGTAGCTCGTTCGCCAGATTGCAGCTATGTGTGGTCAAATCTTGgtaagttttg ... gttgtcacagGTATTGCATTGCAACTATCAGACGATTCATCCTGTGAGACTGTATATAAAC
EST: AGCTGCTGTAGCTCGTTCGCCAGATTGCAGCTATGTGTGGTCAAATCTTG GTATTGCATTGCAACTATCAGACGATTCATCCTGTGAGACTGTATATAAAC
genomic: AGCTGCTGTAGCTCGTTCGCCAGATTGCAGCTATGTGTGGTCAAATCTTGgtaagttttg ... gttgtcacagGTATTGCATTGCAACTATCAGACGATTCATCCTGTGAGACTGTATATAAAC
aatttaactatgcaccatatgattgctatctgaaaataaattcgtgttgtcacagGTATTGCATTGCAACTATCAGACGATTCATCCTGTGAGACTGTATATAAACGAGCACTCATCCTGTCTTCAAGCCAGCAGTCGTATGCAATCCTCTCCAA
atttaac putative branch site (score: 4)
tatctgaaaataaatt TA-rich tract