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gtaagatttcactagctataaactctcccaaattcactttaccaatatcttagttttatgggttaatccttccatgcagAAAATTGATGAGGATAAGCTCTTCAACCTTTTCTCAATGTATGGGAATATCGTGCGTATCAAGATACTCAAAAATAAACCAGATCATGCCCTCATCCAGA
species | Oryza sativa |
transcript | LOC_Os01g64770.5 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CTGGCATCAATGACCGTTGCACACTTCTAGTTAGCAATCTGAACACTGAT AAAATTGATGAGGATAAGCTCTTCAACCTTTTCTCAATGTATGGGAATATCEST: gi|33678526|gb|CF306765.1|CF306765
genomic: CTGGCATCAATGACCGTTGCACACTTCTAGTTAGCAATCTGAACACTGATgtaagatttc ... ttccatgcagAAAATTGATGAGGATAAGCTCTTCAACCTTTTCTCAATGTATGGGAATATC
EST: CTGGCATCAATGACCGTTGCACACTTCTAGTTAGCAATCTGAACACTGAT AAAATTGATGAGGATAAGCTCTTCAACCTTTTCTCAATGTATGGGAATATCEST: gi|218479207|gb|FG957479.1|FG957479
genomic: CTGGCATCAATGACCGTTGCACACTTCTAGTTAGCAATCTGAACACTGATgtaagatttc ... ttccatgcagAAAATTGATGAGGATAAGCTCTTCAACCTTTTCTCAATGTATGGGAATATC
EST: CTGGCATCAATGACCGTTGCACACTTCTAGTTAGCAATCTGAACACTGAT AAAATTGATGAGGATAAGCTCTTCAACCTTTTCTCAATGTATGGGAATATTEST: gi|2428474|gb|C72937.1|C72937
genomic: CTGGCATCAATGACCGTTGCACACTTCTAGTTAGCAATCTGAACACTGATgtaagatttc ... ttccatgcagAAAATTGATGAGGATAAGCTCTTCAACCTTTTCTCAATGTATGGGAATATC
EST: CTGGCATCAATGACCGTTGCACACTTCTAGTTAGCAATCTGAACACTGAT AAAATTGATGAGGATAAGCTCTTCAACCTTTTCTCAATGTATGGGAATATC
genomic: CTGGCATCAATGACCGTTGCACACTTCTAGTTAGCAATCTGAACACTGATgtaagatttc ... ttccatgcagAAAATTGATGAGGATAAGCTCTTCAACCTTTTCTCAATGTATGGGAATATC
ctcccaaattcactttaccaatatcttagttttatgggttaatccttccatgcagAAAATTGATGAGGATAAGCTCTTCAACCTTTTCTCAATGTATGGGAATATCGTGCGTATCAAGATACTCAAAAATAAACCAGATCATGCCCTCATCCAGA
ggttaat putative branch site (score: 4)
tccttccat CT-rich tract
aatatcttagttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagatttcactagctataaactctcccaaattcactttaccaatatcttagttttatgggttaatccttccatgcagAAAATTGATGAGGATAAGCTCTTCAACCTTTTCTCAATGTATGGGAATATCGTGCGTATCAAGATACTCAAAAATAAACCAGATCATGCCCTCATCCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA