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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtaatttgttgataggacagtaatttaactgtgtgcagatcatgcccaatgttagctcagttttcctgaattctcctttttccatctggcgcagGAAAATTTGGAGCATTGTTTGCTTCCATCCCATTTACCATCTTTGCGGCCGTGTACTGCGTCTTGTTTGGACTAGTTG

Basic information

species Oryza sativa
transcript LOC_Os01g55500.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g55500.2 (Oryza sativa), 3'ss of exon 10
lower sequence: GRMZM2G437859_T04 (Zea mays), 3'ss of exon 11
gtgagtaatttgttgataggacagtaatttaactgtgtgcagatcatgcccaatgttagctcagttttcctgaattctcctttttccatctggcgcagGAAAATTTGGAGCATTGTTTGCTTCCATCCCATTTACCATCTTTGCGGCCGTGTACTGCGTCTTGTTTGGACTAGTTG
           ||    || ||| |       ||| ||||  |    |    | |   ||||     ||||   | |   || ||  ||| |  ||||| ||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||||| |||| || |||||||
-----------gtgagcagaaca-tgtccctgctgcgtgcgaagggag---gaggcaggctcctgactcctc--tccattttattttatcggttgcagGGAAATTTGGAGCCTTGTTCGCTTCCATCCCGTTCACCATCTTTGCGGCCGTGTACTGCGTCCTGTTCGGGCTAGTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58669485|gb|CK058171.1|CK058171
EST:     ACGAGTTATACAGATCTCTGCCGGCTTCATGATCTTCTTCTCCGTGCTAG                         GAAAATTTGGAGCATTGTTTGCTTCCATCCCATTTACCATCTTTGCGGCCG
genomic: ACGAGTTATACAGATCTCTGCCGGCTTCATGATCTTCTTCTCCATGCTAGgtgagtaatt ... tctggcgcagGAAAATTTGGAGCATTGTTTGCTTCCATCCCATTTACCATCTTTGCGGCCG
EST: gi|33793472|gb|CF322619.1|CF322619
EST:     ACGAGTTATACAGATCTCTGCCGGCTTCATGATCTTCTTCTCCATGCTAG                         GAAAATTTGGAGCATTGTTTGCTTCCATCCCATTTACCATCTTTGCGGCCG
genomic: ACGAGTTATACAGATCTCTGCCGGCTTCATGATCTTCTTCTCCATGCTAGgtgagtaatt ... tctggcgcagGAAAATTTGGAGCATTGTTTGCTTCCATCCCATTTACCATCTTTGCGGCCG
EST: gi|25807066|gb|CA763027.1|CA763027
EST:     ACGAGTTATACAGATCTCTGCCGGCTTCATGATCTTTTTCTCCGTGCTAG                         GAAAATTTGGAGCATTGTTTGCTTCCATCCCATTTACCATCTTTGCGGCCG
genomic: ACGAGTTATACAGATCTCTGCCGGCTTCATGATCTTCTTCTCCATGCTAGgtgagtaatt ... tctggcgcagGAAAATTTGGAGCATTGTTTGCTTCCATCCCATTTACCATCTTTGCGGCCG
EST: gi|87026155|gb|CI256898.1|CI256898
EST:     ACGAGTTATACAGATCTCTGCCGGCTTCATGATCTTCTTCTCCATGCTAG                         GAAAATTTGGAGCATTGTTTGCTTCCATCCCATTTACCATCTTTGCGGCCG
genomic: ACGAGTTATACAGATCTCTGCCGGCTTCATGATCTTCTTCTCCATGCTAGgtgagtaatt ... tctggcgcagGAAAATTTGGAGCATTGTTTGCTTCCATCCCATTTACCATCTTTGCGGCCG
EST: gi|58670557|gb|CK059243.1|CK059243
EST:     ACGAGTTATACAGATCTCTGCCGGCTTCATGATCTTCTTCTCCGTGCTAG                         GAAAATTTGGAGCATTGTTTGCTTCCATCCCATTTACCATCTTTGCGGCCG
genomic: ACGAGTTATACAGATCTCTGCCGGCTTCATGATCTTCTTCTCCATGCTAGgtgagtaatt ... tctggcgcagGAAAATTTGGAGCATTGTTTGCTTCCATCCCATTTACCATCTTTGCGGCCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatgcccaatgttagctcagttttcctgaattctcctttttccatctggcgcagGAAAATTTGGAGCATTGTTTGCTTCCATCCCATTTACCATCTTTGCGGCCGTGTACTGCGTCTTGTTTGGACTAGTTG
                     ttttcctgaattctcc  CT-rich tract
        aatgtta  TA-rich tract