1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...taatattccattctcaagaaagcacttggcaagcctcttttttttttagagagagagatggcacaaccacttgttaattttacttcggatactcttgcagGATCATCCATACCGTCAGGATTTGTTCTATGGGTCATGAAAGATATTCCTCATCGGCAGACAGTAGAAAGGCCCACACAATCAAGAGTTGTTATTTTGTT
species | Oryza sativa |
transcript | LOC_Os01g54784.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TGAATACATCATCAACAATGCTATCATATTGTTTATGTACTATTTCATAG GATCATCCATACCGTCAGGATTTGTTCTATGGGTCATGAAAGATATTCCTCEST: gi|29643216|gb|CB648223.1|CB648223
genomic: TGAATACATCATCAACAATGCTATCATATTGTTTATGTACTATTTCATAGgtatctctcc ... actcttgcagGATCATCCATACCGTCAGGATTTGTTCTATGGGTCATGAAAGATATTCCTC
EST: TGAATACATCATCAACAATGCTATCATATTGTTTATGTACTATTTCATAG GATCATCCATACCGTCAGGATTTGTTCTATGGGTCATGAAAGATATTCCTCEST: gi|58692115|gb|CK080802.1|CK080802
genomic: TGAATACATCATCAACAATGCTATCATATTGTTTATGTACTATTTCATAGgtatctctcc ... actcttgcagGATCATCCATACCGTCAGGATTTGTTCTATGGGTCATGAAAGATATTCCTC
EST: TGAATACATCATCAACAATGCTATCATATTGTTTATGTACTATTTCATAG GATCATCCATACCGTCAGGATTTGTTCTATGGGTCATGAAAGATATTCCTCEST: gi|29640875|gb|CB645882.1|CB645882
genomic: TGAATACATCATCAACAATGCTATCATATTGTTTATGTACTATTTCATAGgtatctctcc ... actcttgcagGATCATCCATACCGTCAGGATTTGTTCTATGGGTCATGAAAGATATTCCTC
EST: TGAATACATCATCAACAATGCTATCATATTGTTTATGTACTATTTCATAG GATCATCCATACCGTCAGGATTTGTTCTATGGGTCATGAAAGATATTCCTCEST: gi|87021846|gb|CI278013.1|CI278013
genomic: TGAATACATCATCAACAATGCTATCATATTGTTTATGTACTATTTCATAGgtatctctcc ... actcttgcagGATCATCCATACCGTCAGGATTTGTTCTATGGGTCATGAAAGATATTCCTC
EST: TGAATACATCATCAACAATGCTATCATATTGTTTATGTACTATTTCATAG GATCATCCATACCGTCAGGATTTGTTCTATGGGTCATGAAAGATATTCCTCEST: gi|396941229|gb|HO188438.1|HO188438
genomic: TGAATACATCATCAACAATGCTATCATATTGTTTATGTACTATTTCATAGgtatctctcc ... actcttgcagGATCATCCATACCGTCAGGATTTGTTCTATGGGTCATGAAAGATATTCCTC
EST: TGAATACATCATCAACAATGCTATCATATTGTTTATGTACTATTTCATAG GATCATCCATACCGTCAGGATTTGTTCTATGGGTCATGAAAGATATTCCTC
genomic: TGAATACATCATCAACAATGCTATCATATTGTTTATGTACTATTTCATAGgtatctctcc ... actcttgcagGATCATCCATACCGTCAGGATTTGTTCTATGGGTCATGAAAGATATTCCTC
ttagagagagagatggcacaaccacttgttaattttacttcggatactcttgcagGATCATCCATACCGTCAGGATTTGTTCTATGGGTCATGAAAGATATTCCTCATCGGCAGACAGTAGAAAGGCCCACACAATCAAGAGTTGTTATTTTGTT
tgttaat putative branch site (score: 16)
tactctt putative PPT
ttgttaattttactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taatattccattctcaagaaagcacttggcaagcctcttttttttttagagagagagatggcacaaccacttgttaattttacttcggatactcttgcagGATCATCCATACCGTCAGGATTTGTTCTATGGGTCATGAAAGATATTCCTCATCGGCAGACAGTAGAAAGGCCCACACAATCAAGAGTTGTTATTTTGTT
- - - tccattc
- - - - - - - caagaaa
- - - - - - - - - - - - - -ggcaagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acaacca