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gtgacacattacagcttacaactgtaaaaattgcttgctgttttattgagaatgatctagacaagtgatctagaattaaattgattgccattataatgggatctcattatacagGAGATGTATGAGGATGCAAACCAAGTTGCGGCTGACGCTGTAGGCAGCATCAGAACTGTAGCATCTTTCTGTTCAGAGAAAAGAGTGGTGGCAATATACA
species | Oryza sativa |
transcript | LOC_Os01g50100.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AGGGCTATGCTCAAGTTAAGTTCTTGAAGGGGTTCAGTGAAGAATCTAAG GAGATGTATGAGGATGCAAACCAAGTTGCGGCTGACGCTGTAGGCAGCATCEST: gi|319908555|gb|HS977683.1|HS977683
genomic: AGGGCTATGCTCAAGTTAAGTTCTTGAAGGGGTTCAGTGAAGAATCTAAGgtgacacatt ... cattatacagGAGATGTATGAGGATGCAAACCAAGTTGCGGCTGACGCTGTAGGCAGCATC
EST: AGGGCTATGCTCAAGTTAAGTTCTTGAAGGGGTTCAGTGAAGAATCTAAG GAGATGTATGAGGATGCAAACCAAGTTGCGGCTGACGCTGTAGGCAGCATCEST: gi|29616420|gb|CB621432.1|CB621432
genomic: AGGGCTATGCTCAAGTTAAGTTCTTGAAGGGGTTCAGTGAAGAATCTAAGgtgacacatt ... cattatacagGAGATGTATGAGGATGCAAACCAAGTTGCGGCTGACGCTGTAGGCAGCATC
EST: AGGGCTATGCTCAAGTTAAGTTCTTGAAGGGGTTCAGTGAAGAATCTAAG GAGATGTATGAGGATGCAAACCAAGTTGCGGCTGACGCTGTAGGCAGCATCEST: gi|29620635|gb|CB625646.1|CB625646
genomic: AGGGCTATGCTCAAGTTAAGTTCTTGAAGGGGTTCAGTGAAGAATCTAAGgtgacacatt ... cattatacagGAGATGTATGAGGATGCAAACCAAGTTGCGGCTGACGCTGTAGGCAGCATC
EST: AGGGCTATGCTCAAGTTAAGTTCTTGAAGGGGTTCAGTGAAGAATCTAAG GAGATGTATGAGGATGCAAACCAAGTTGCGGCTGACGCTGTAGGCAGCATCEST: gi|319908588|gb|HS977716.1|HS977716
genomic: AGGGCTATGCTCAAGTTAAGTTCTTGAAGGGGTTCAGTGAAGAATCTAAGgtgacacatt ... cattatacagGAGATGTATGAGGATGCAAACCAAGTTGCGGCTGACGCTGTAGGCAGCATC
EST: AGGGCTATGCTCAAGTTAAGTTCTTGAAGGGGTTCAGTGAAGAATCTAAG GAGATGTATGANGGATGCAAACCAAGTTGCGGCTGACGCTGTAGGCAGCAT
genomic: AGGGCTATGCTCAAGTTAAGTTCTTGAAGGGGTTCAGTGAAGAATCTAAGgtgacacatt ... cattatacagGAGATGTATGA-GGATGCAAACCAAGTTGCGGCTGACGCTGTAGGCAGCAT
gacaagtgatctagaattaaattgattgccattataatgggatctcattatacagGAGATGTATGAGGATGCAAACCAAGTTGCGGCTGACGCTGTAGGCAGCATCAGAACTGTAGCATCTTTCTGTTCAGAGAAAAGAGTGGTGGCAATATACA
aattgat putative branch site (score: 4)
tctcatt putative PPT
tagaattaaattgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgacacattacagcttacaactgtaaaaattgcttgctgttttattgagaatgatctagacaagtgatctagaattaaattgattgccattataatgggatctcattatacagGAGATGTATGAGGATGCAAACCAAGTTGCGGCTGACGCTGTAGGCAGCATCAGAACTGTAGCATCTTTCTGTTCAGAGAAAAGAGTGGTGGCAATATACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG