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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtactttttaaaaggatttgatattgtcactgtgagtgtgatcttgctagagtttgctcgtgctcatggaactttcccttatttttaccctttattcagGACTCCAAGCTAAAATTGCATCTGGGGGTTTCATAAAGAGTACATTGTTCAATCTTGCTTACAAATT

Basic information

species Oryza sativa
transcript LOC_Os01g46750.2
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g46750.4 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM5G861300_T01 (Zea mays), 3'ss of exon 11
-------tgtactttttaaaaggatttgatattgtcactgtgagtgtgatcttgctagagtttgctcgtgctcatggaactttcccttatttttaccctttattcagGACTCCAAGCTAAAATTGCATCTGGGGGTTTCATAAAGAGTACATTGTTCAATCTTGCTTACAAATT
       |  ||| || |||||| |||||      || |||  |||  || |||   |    ||    | ||| |  ||| ||    | || |       | |||||| || |||||||||||| | ||||| || ||  ||||||||||| |||| ||||||||||||| |||
gtttccattcactgttcaaaaggctttgaagcgaccattgtctgtgcaattttgggtgttcatgggtatactcttctaacatttagctgttct-------ttttcagGGCTACAAGCTAAAATTTCCTCTGGTGGGTTTTTAAAGAGTACAGTGTTTAATCTTGCTTACAGATT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|2310480|gb|C26635.1|C26635
EST:     CCAACTATCTTGTGTGCTTGTTCCACGTGTGCTTGACCGGATATTT-CTG                         GACTCCAAGCTAAAATTGCATCTGGGGGGTTCATAAAGAG-ACATT
genomic: CCAACTATCTTGTGTGCT-GTTCCACGTGTGCTTGACCGGATATTTTCTGgtaaggagct ... ctttattcagGACTCCAAGCTAAAATTGCATCTGGGGGTTTCATAAAGAGTACATT
EST: gi|29673146|gb|CB669421.1|CB669421
EST:     ACCAACTATCTTGTGTGCTGTTCCACGTGTGCTTGACCGGATATTTTCTG                         GACTCCAAGCTAAAATTGCATCTGGGGGTTTCATAAAGAGTACATTGTTCA
genomic: ACCAACTATCTTGTGTGCTGTTCCACGTGTGCTTGACCGGATATTTTCTGgtaaggagct ... ctttattcagGACTCCAAGCTAAAATTGCATCTGGGGGTTTCATAAAGAGTACATTGTTCA
EST: gi|58672830|gb|CK061516.1|CK061516
EST:     ACCAACTATCTTGTGTGCTGTTCCACGTGTGCTTGACCGGATATTTTCTG                         GACTCCAAGCTAAAATTGCATCTGGGGGTTTCATAAAGAGTACATTGTTCA
genomic: ACCAACTATCTTGTGTGCTGTTCCACGTGTGCTTGACCGGATATTTTCTGgtaaggagct ... ctttattcagGACTCCAAGCTAAAATTGCATCTGGGGGTTTCATAAAGAGTACATTGTTCA
EST: gi|29618098|gb|CB623110.1|CB623110
EST:     ACCAACTATCTTGTGTGCTGTTCCACGTGTGCTTGACCGGATATTTTCTG                         GACTCCAAGCTAAAATTGCATCTGGGGGTTTCATAAAGAGTACATTGTTCA
genomic: ACCAACTATCTTGTGTGCTGTTCCACGTGTGCTTGACCGGATATTTTCTGgtaaggagct ... ctttattcagGACTCCAAGCTAAAATTGCATCTGGGGGTTTCATAAAGAGTACATTGTTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctagagtttgctcgtgctcatggaactttcccttatttttaccctttattcagGACTCCAAGCTAAAATTGCATCTGGGGGTTTCATAAAGAGTACATTGTTCAATCTTGCTTACAAATT
                           ctttcccttattttta  CT-rich tract
                                  ttattttta  TA-rich tract