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...gcctaattaccaggaaggcagccttctgtaccttatattattttgtgttttatgtttctttgttctgatcttgattttgaattgtgacttgaaaatatagGTGCGTGTAAATGCCTTGCGCTGTTTAGGGGATCTTGTTCCATCTTTGGATAAAGAAGGCATACTGGAGATCTTGCAAACTCTTCGGCGTTGTACAGCTG
species | Oryza sativa |
transcript | LOC_Os01g42950.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CTGTTCTGCCACGCGTACATGGATTAGCCTTAAAGACTACAGTTGCTGCG GTGCGTGTAAATGCCTTGCGCTGTTTAGGGGATCTTGTTCCATCTTTTGGAEST: gi|58688741|gb|CK077428.1|CK077428
genomic: CTGTTCTGCCACGCGTACATGGATTAGCCTTAAAGACTACAGTTGCTGCGgtatgcataa ... gaaaatatagGTGCGTGTAAATGCCTTGCGCTGTTTAGGGGATCTTGTTCCATCTTT-GGA
EST: CTGTTCTGCCACGCGTACATGGATTAGCCTTAAAGACTACAGTTGCTGCG GTGCGTGTAAATGCCTTGCGCTGTTTAGGGGATCTTGTTCCATCTTTGGATEST: gi|29622819|gb|CB627830.1|CB627830
genomic: CTGTTCTGCCACGCGTACATGGATTAGCCTTAAAGACTACAGTTGCTGCGgtatgcataa ... gaaaatatagGTGCGTGTAAATGCCTTGCGCTGTTTAGGGGATCTTGTTCCATCTTTGGAT
EST: CTGTTCTGCCACGCGTACATGGATTAGCCTTAAAGACTACAGTTGCTGCG GTGCGTGTAAATGCCTTGCGCTGTTTAGGGGATCTTGTTCCATCTTTGGAT
genomic: CTGTTCTGCCACGCGTACATGGATTAGCCTTAAAGACTACAGTTGCTGCGgtatgcataa ... gaaaatatagGTGCGTGTAAATGCCTTGCGCTGTTTAGGGGATCTTGTTCCATCTTTGGAT
tgttttatgtttctttgttctgatcttgattttgaattgtgacttgaaaatatagGTGCGTGTAAATGCCTTGCGCTGTTTAGGGGATCTTGTTCCATCTTTGGATAAAGAAGGCATACTGGAGATCTTGCAAACTCTTCGGCGTTGTACAGCTG
ttgaaaatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcctaattaccaggaaggcagccttctgtaccttatattattttgtgttttatgtttctttgttctgatcttgattttgaattgtgacttgaaaatatagGTGCGTGTAAATGCCTTGCGCTGTTTAGGGGATCTTGTTCCATCTTTGGATAAAGAAGGCATACTGGAGATCTTGCAAACTCTTCGGCGTTGTACAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - -ccttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttctgat