1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtgaaccttctgctttatcagagacaccctcttttgacaattttttctgcatattttaacctaactgacctttgtttgatgctttttggtatttaacagATTCTATCCGCCTTTTCACACGACGAATAGTAAGGAGGGTAGCATAAGTTACCCAAATGATCATAAGCCTCAACCTGAAGCAAGAAATGTAACGGAAAAT
species | Oryza sativa |
transcript | LOC_Os01g42490.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CAGCAAACTAGTACTGCACAGGGACTATATAGTGGTCCTAACACAGCTCG ATTCTATCCGCCTTTTCACACGACGAATAGTAAGGAGGGTAGCATAAGTTAEST: gi|29637192|gb|CB642201.1|CB642201
genomic: CAGCAAACTAGTACTGCACAGGGACTATATACTGGTCCTAACACAGCTCGgtgaaccttc ... tatttaacagATTCTATCCGCCTTTTCACACGACGAATAGTAAGGAGGGTAGCATAAGTTA
EST: CAGCAAACTAGTACTGCACAGGGACTATATACTGGTCCTAACACAGCTCG ATTCTATCCGCCTTTTCACACGACGAATAGTAAGGAGGGTAGCATAAGTTAEST: gi|300215928|gb|HO088554.1|HO088554
genomic: CAGCAAACTAGTACTGCACAGGGACTATATACTGGTCCTAACACAGCTCGgtgaaccttc ... tatttaacagATTCTATCCGCCTTTTCACACGACGAATAGTAAGGAGGGTAGCATAAGTTA
EST: CAGCAAACTAGTACTGCACAGGGACTATATACTGGTCCTAACACAGCTCG ATTCTATCCGCCTTTTCACACGACGAATAGTAAGGAGGGTAGCATAAGTTAEST: gi|33677736|gb|CF305975.1|CF305975
genomic: CAGCAAACTAGTACTGCACAGGGACTATATACTGGTCCTAACACAGCTCGgtgaaccttc ... tatttaacagATTCTATCCGCCTTTTCACACGACGAATAGTAAGGAGGGTAGCATAAGTTA
EST: CAGCAAACTCGTACTGCACAGGGACTATATACTGGTCCTAACACAGCTCG ATTCTATCCGCCTTTTCACACGACGAATAGTAAGGAGGGTAGCATAAGTTAEST: gi|33793336|gb|CF322549.1|CF322549
genomic: CAGCAAACTAGTACTGCACAGGGACTATATACTGGTCCTAACACAGCTCGgtgaaccttc ... tatttaacagATTCTATCCGCCTTTTCACACGACGAATAGTAAGGAGGGTAGCATAAGTTA
EST: CAGCAAACTAGTACTGCACAGGGACTATATACTGGTCCTAACACAGCTCG ATTCTATCCGCCTTTTCACACGACGAATAGTAAGGAGGGTAGCATAAGTTA
genomic: CAGCAAACTAGTACTGCACAGGGACTATATACTGGTCCTAACACAGCTCGgtgaaccttc ... tatttaacagATTCTATCCGCCTTTTCACACGACGAATAGTAAGGAGGGTAGCATAAGTTA
ttctgcatattttaacctaactgacctttgtttgatgctttttggtatttaacagATTCTATCCGCCTTTTCACACGACGAATAGTAAGGAGGGTAGCATAAGTTACCCAAATGATCATAAGCCTCAACCTGAAGCAAGAAATGTAACGGAAAAT
atattttaacctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaaccttctgctttatcagagacaccctcttttgacaattttttctgcatattttaacctaactgacctttgtttgatgctttttggtatttaacagATTCTATCCGCCTTTTCACACGACGAATAGTAAGGAGGGTAGCATAAGTTACCCAAATGATCATAAGCCTCAACCTGAAGCAAGAAATGTAACGGAAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA