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gcaagaacctaaatattttcttgattatattatctcttattttattcagaaattataagtatgccaattctgtgttcagGTACTTGACTGTGCAGTTTGTTCGTTTCTTTTGGAAAAGGGAATCAAACCAGAAGGCAAAGATTTTACGG
species | Oryza sativa |
transcript | LOC_Os01g36930.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GGTCGCACTGCTCTTTATACAAGAGAGTCAAGAATAAATGAGTTGCCTAG GTACTTGACTGTGCAGTTTGTTCGTTTCTTTTGGAAAAGGGAATCAAACCAEST: gi|29674106|gb|CB670381.1|CB670381
genomic: GGTCGCACTGCTCTTTATACAAGAGAGTCAAGAATAAATGAGTTGCCTAGgcaagaacct ... ctgtgttcagGTACTTGACTGTGCAGTTTGTTCGTTTCTTTTGGAAAAGGGAATCAAACCA
EST: AGAGTCAAGAATAAATGAGTTGCCTAG GTACTTGACTGTGCAGTTTGTTCGTTTCTTTTGGAAAAGGGAATCAAACCAEST: gi|29679501|gb|CB675776.1|CB675776
genomic: AGAGTCAAGAATAAATGAGTTGCCTAGgcaagaacct ... ctgtgttcagGTACTTGACTGTGCAGTTTGTTCGTTTCTTTTGGAAAAGGGAATCAAACCA
EST: GAATAAATGAGTTGCCTAG GTACTTGACTGTGCAGTTTGTTCGTTTCTTTTGGAAAAGGGAATCAAACCAEST: gi|218489926|gb|FG960730.1|FG960730
genomic: GAATAAATGAGTTGCCTAGgcaagaacct ... ctgtgttcagGTACTTGACTGTGCAGTTTGTTCGTTTCTTTTGGAAAAGGGAATCAAACCA
EST: GGTCGCACTGCTCTTTATACAAGAGAGTCAAGAATAAATGAGTTGCCTAG GTACTTGACTGTGCAGTTTGTTCGTTTCTTTTGGAAAAGGGAATCAAACCAEST: gi|29667425|gb|CB663700.1|CB663700
genomic: GGTCGCACTGCTCTTTATACAAGAGAGTCAAGAATAAATGAGTTGCCTAGgcaagaacct ... ctgtgttcagGTACTTGACTGTGCAGTTTGTTCGTTTCTTTTGGAAAAGGGAATCAAACCA
EST: GAGAGTCAAGAATAAATGAGTTGCCTAG GTACTTGACTGTGCAGTTTGTTCGTTTCTTTTGGAAAAGGGAATCAAACCAEST: gi|66916241|gb|CX103089.1|CX103089
genomic: GAGAGTCAAGAATAAATGAGTTGCCTAGgcaagaacct ... ctgtgttcagGTACTTGACTGTGCAGTTTGTTCGTTTCTTTTGGAAAAGGGAATCAAACCA
EST: GGTCGCACTGCTCTTTATACAAGAGAGTCAAGAATAAATGAGTTGCCTAG GTACTTGACTGTGCAGTTTGTTCGTTTCTTTTGGAAAAGGGAATCAAACCAEST: gi|58676643|gb|CK065330.1|CK065330
genomic: GGTCGCACTGCTCTTTATACAAGAGAGTCAAGAATAAATGAGTTGCCTAGgcaagaacct ... ctgtgttcagGTACTTGACTGTGCAGTTTGTTCGTTTCTTTTGGAAAAGGGAATCAAACCA
EST: GGTCGCACTGCTCTTTATACAAGAGAGTCAAGAATAAATGAGTTGCCTAG GTACTTGACTGTGCAGTTTGTTCGTTTCTTTTGGAAAAGGGAATCAAACCA
genomic: GGTCGCACTGCTCTTTATACAAGAGAGTCAAGAATAAATGAGTTGCCTAGgcaagaacct ... ctgtgttcagGTACTTGACTGTGCAGTTTGTTCGTTTCTTTTGGAAAAGGGAATCAAACCA
ttatattatctcttattttattcagaaattataagtatgccaattctgtgttcagGTACTTGACTGTGCAGTTTGTTCGTTTCTTTTGGAAAAGGGAATCAAACCAGAAGGCAAAGATTTTACGG
ttatctcttattttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagaacctaaatattttcttgattatattatctcttattttattcagaaattataagtatgccaattctgtgttcagGTACTTGACTGTGCAGTTTGTTCGTTTCTTTTGGAAAAGGGAATCAAACCAGAAGGCAAAGATTTTACGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG