1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...atatcttcaatgtactgaatgtttttattttccttaccagaaaatgtttgaatttgccatgattcttctgtgattaacttcctcatattgtttgtattagCTATCTGCAATAACCACCATTGGATTTGTCAAAGGCGCCCCAGAAATTGATGTACAAGGCTTTAATGTGTACCACAAGAATCGTTTAATAGCGGTGAGGA
species | Oryza sativa |
transcript | LOC_Os01g36840.3 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TGTATCCTGAATGCGTGTTGTATAAACCACAAATTGCTGGGCTTGCAGAG CTATCTGCAATAACCACCATTGGATTTGTCAAAGGCGCCCCAGAAAEST: gi|86905480|gb|CI285443.1|CI285443
genomic: TGTATCCTGAATGCGTGTTGTATAAACCACAAATTGCTGGGCTTGCAGAGgtacgtgcaa ... tttgtattagCTATCTGCAATAACCACCATTGGATTTGTCAAAGGCGCCCCAGAAA
EST: TGTATCCTGAATGCGTGTTGTATAAACCACAAATTGCTGGGCTTGCAGAG CTATCTGCAATAACCACCATTGGATTTGTCAAAGGCGCCCCAGAAATTGATEST: gi|87023564|gb|CI286315.1|CI286315
genomic: TGTATCCTGAATGCGTGTTGTATAAACCACAAATTGCTGGGCTTGCAGAGgtacgtgcaa ... tttgtattagCTATCTGCAATAACCACCATTGGATTTGTCAAAGGCGCCCCAGAAATTGAT
EST: TGTATCCTGAATGCGTGTTGTATAAACCACAAATTGCTGGGCTTGCAGAG CTATCTGCAATAACCACCATTGGATTTGTCAAAGGCGCCCCAGAAATTGAT
genomic: TGTATCCTGAATGCGTGTTGTATAAACCACAAATTGCTGGGCTTGCAGAGgtacgtgcaa ... tttgtattagCTATCTGCAATAACCACCATTGGATTTGTCAAAGGCGCCCCAGAAATTGAT
gtttgaatttgccatgattcttctgtgattaacttcctcatattgtttgtattagCTATCTGCAATAACCACCATTGGATTTGTCAAAGGCGCCCCAGAAATTGATGTACAAGGCTTTAATGTGTACCACAAGAATCGTTTAATAGCGGTGAGGA
gattaac putative branch site (score: 1)
atattgtttgtatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatcttcaatgtactgaatgtttttattttccttaccagaaaatgtttgaatttgccatgattcttctgtgattaacttcctcatattgtttgtattagCTATCTGCAATAACCACCATTGGATTTGTCAAAGGCGCCCCAGAAATTGATGTACAAGGCTTTAATGTGTACCACAAGAATCGTTTAATAGCGGTGAGGA
- - - - - - - ctgaatg
- - - - - - - - - - - - - - - - - -accagaa
- - - - - - - - - - - - - - - - - - - - - - tgtttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gccatga