1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...cttctactgagttgtactgtagcaagttctagcaaaatggttacttttgctagttggagattgaattaatgccttcattactcatgaacaattactttagATGTGGGAGCTGAATGAGAAAGGAAACCTCATTAGCAGTTACTCAAGATTATGTGCCACGGTGGAATCCAACAATAAAGGAG
species | Oryza sativa |
transcript | LOC_Os01g33420.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ATGCTATGCAG ATGTGGGAGCTGAATGAGAAATGAAACCTCATTAGCATTTACTCAAGATTAEST: gi|86535277|gb|CI175483.1|CI175483
genomic: ATGCTATGCAGgtaaatgaca ... attactttagATGTGGGAGCTGAATGAGAAAGGAAACCTCATTAGCAGTTACTCAAGATTA
EST: CAGATAGCAAGTTTCCCATGGTTTCAAGGTGCAGGTGGCATGCTATGCAG ATGTGGGAGCTGAATGAGAAAGGAAACCTCATTAGCAGTTACTCAAGATTAEST: gi|88829511|gb|CI074381.1|CI074381
genomic: CAGATAGCAAGTTTCCCATGTTTTCAAGGTGCAGGTGGCATGCTATGCAGgtaaatgaca ... attactttagATGTGGGAGCTGAATGAGAAAGGAAACCTCATTAGCAGTTACTCAAGATTA
EST: CAGGTGGCATGCTATGCAG ATGTGGGAGCTGAATGAG-AAGGAAACCTCATTAGCAGTTACTCAAGATTAEST: gi|89174390|gb|CI110588.1|CI110588
genomic: CAGGTGGCATGCTATGCAGgtaaatgaca ... attactttagATGTGGGAGCTGAATGAGAAAGGAAACCTCATTAGCAGTTACTCAAGATTA
EST: CAGATAGCAAGTTTCCCATGTTTTCAAGGTGCAGGTGGCATGCTATGCAG ATGTGGGAGCTGAATGAGAAAGGAAACCTCATTAGCAGTTACTCAAGATTAEST: gi|29675804|gb|CB672079.1|CB672079
genomic: CAGATAGCAAGTTTCCCATGTTTTCAAGGTGCAGGTGGCATGCTATGCAGgtaaatgaca ... attactttagATGTGGGAGCTGAATGAGAAAGGAAACCTCATTAGCAGTTACTCAAGATTA
EST: CAGATAGCAAGTTTCCCATGTTTTCAAGGTGCAGGTGGCATGCTATGCAG ATGTGGGAGCTGAATGAGAAAGGAAACTTCATTAGCAGTTACTCAAGATTAEST: gi|29675806|gb|CB672081.1|CB672081
genomic: CAGATAGCAAGTTTCCCATGTTTTCAAGGTGCAGGTGGCATGCTATGCAGgtaaatgaca ... attactttagATGTGGGAGCTGAATGAGAAAGGAAACCTCATTAGCAGTTACTCAAGATTA
EST: CAGATAGCAAGTTTCCCATGTTTTCAAGGTGCAGGTGGCATGCTATGCAG ATGTGGGAGCTGAATGAGAAAGGAAACCTCATTAGCAGTTACTCAAGATTAEST: gi|88227256|gb|CI228369.1|CI228369
genomic: CAGATAGCAAGTTTCCCATGTTTTCAAGGTGCAGGTGGCATGCTATGCAGgtaaatgaca ... attactttagATGTGGGAGCTGAATGAGAAAGGAAACCTCATTAGCAGTTACTCAAGATTA
EST: CAGATAGCAAGTTTCCCATGTTTTCAAGGTGCAGGTGGCATGCTATGCAG ATGTGGGAGCTGAATGAGAAAGGAAACCTCATTAGCAGTTACTCAAGATTA
genomic: CAGATAGCAAGTTTCCCATGTTTTCAAGGTGCAGGTGGCATGCTATGCAGgtaaatgaca ... attactttagATGTGGGAGCTGAATGAGAAAGGAAACCTCATTAGCAGTTACTCAAGATTA
tttgctagttggagattgaattaatgccttcattactcatgaacaattactttagATGTGGGAGCTGAATGAGAAAGGAAACCTCATTAGCAGTTACTCAAGATTATGTGCCACGGTGGAATCCAACAATAAAGGAG
aattaat putative branch site (score: 16)
ttacttt putative PPT
attgaattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttctactgagttgtactgtagcaagttctagcaaaatggttacttttgctagttggagattgaattaatgccttcattactcatgaacaattactttagATGTGGGAGCTGAATGAGAAAGGAAACCTCATTAGCAGTTACTCAAGATTATGTGCCACGGTGGAATCCAACAATAAAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- -ctactga
- - - - - - - - ctgtagc
- - - - - - - - - - - - - - - agcaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgccttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgaac