1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
gtactgcaatacttccaactgtccttaatcatatggttatagaccaaatgtcagttttataaatatcacaatactttattagttcaagtctgtcactaaacccttttattcatcatgtcagATTGACGCTCATTCTGGAGCAGTTAATGACATAGCATTCTCCCGGCCAAATAAGCAACTTTGTGTTGTCACTTGTGGAGATGATAGGCTGATAAAG
species | Oryza sativa |
transcript | LOC_Os01g15020.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TTCATCTGCATGCATATCAGCAACCAAATGAGACGCGGCAAGTTCTAGAG ATTGACGCTCATTCTGGAGCAGTTAATGACATAGCATTCTCCCGGCCAAATEST: gi|86888343|gb|CI303625.1|CI303625
genomic: TTCATCTGCATGCATATCAGCAACCAAATGAGACGCGGCAAGTTCTAGAGgtactgcaat ... atcatgtcagATTGACGCTCATTCTGGAGCAGTTAATGACATAGCATTCTCCCGGCCAAAT
EST: TTCATCTGCATGCATATCAGCAACCAAATGAGACGCGGCAAGTTCTAGAG ATTGACGCTCATTCTGGAGCAGTTAATGACATAGCATTCTCCCGGCCAAATEST: gi|29630452|gb|CB635461.1|CB635461
genomic: TTCATCTGCATGCATATCAGCAACCAAATGAGACGCGGCAAGTTCTAGAGgtactgcaat ... atcatgtcagATTGACGCTCATTCTGGAGCAGTTAATGACATAGCATTCTCCCGGCCAAAT
EST: CCAAATGAGACGCGGCCATTTCAAGAG ATTGACGCTCATTCTGGAGCAGTTAATGACATAGCATTCTCCCGGCCAAATEST: gi|29628115|gb|CB633126.1|CB633126
genomic: CCAAATGAGACGCGGCAAGTTCTAGAGgtactgcaat ... atcatgtcagATTGACGCTCATTCTGGAGCAGTTAATGACATAGCATTCTCCCGGCCAAAT
EST: TTCATCTGCATGCATATCAGCAACCAAATGAGACGCGGCAAGTTCTAGAG ATTGACGCTCATTCTGGAGCAGTTAATGACATAGCATTCTCCCGGCCAAAT
genomic: TTCATCTGCATGCATATCAGCAACCAAATGAGACGCGGCAAGTTCTAGAGgtactgcaat ... atcatgtcagATTGACGCTCATTCTGGAGCAGTTAATGACATAGCATTCTCCCGGCCAAAT
cacaatactttattagttcaagtctgtcactaaacccttttattcatcatgtcagATTGACGCTCATTCTGGAGCAGTTAATGACATAGCATTCTCCCGGCCAAATAAGCAACTTTGTGTTGTCACTTGTGGAGATGATAGGCTGATAAAG
cactaaa putative branch site (score: 69)
cccttttattcatc CT-rich tract
tactttatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactgcaatacttccaactgtccttaatcatatggttatagaccaaatgtcagttttataaatatcacaatactttattagttcaagtctgtcactaaacccttttattcatcatgtcagATTGACGCTCATTCTGGAGCAGTTAATGACATAGCATTCTCCCGGCCAAATAAGCAACTTTGTGTTGTCACTTGTGGAGATGATAGGCTGATAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT