1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaattcttcattcctgcccactctcgaattatttataatttgtaaggcacgtactatacatcactggagtttgaggtcgtagaattttgcagcatgcatgaaggtaaatgaaaattatctgatctattgccgttcccagggattgttgacaagccccctctttcttccttatgtagGCAATTTCATTCTCCAATATGTATGCCCCTGAGCATTTGATCATCAATGTAAAGGATGCTGAACAGTGGGAGGATCTTGTCGAGAATGCAG
species | Oryza sativa |
transcript | LOC_Os01g13190.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CCACAGTTTCACTGTTTTTGCGAAAGACATGGTTGAG GCAATTTCATTCTCCAATATGTATGCCCCTGAGCATTTGATCATCAATGTAEST: gi|29685418|gb|CB681693.1|CB681693
genomic: CCACAGTTTCACTGTTTTTGCGAAAGACATGGTTGAGgtaattcttc ... ccttatgtagGCAATTTCATTCTCCAATATGTATGCCCCTGAGCATTTGATCATCAATGTA
EST: CGAAAGCTCTTGGCCACAGTTTCACTGTTTTTGCGAAAGACATGGTTGAG GCAATTTCATTCTCCAATATGTATGCCCCTGAGCATTTGATCATCAATGTAEST: gi|86493486|gb|CI136119.1|CI136119
genomic: CGAAAGCTCTTGGCCACAGTTTCACTGTTTTTGCGAAAGACATGGTTGAGgtaattcttc ... ccttatgtagGCAATTTCATTCTCCAATATGTATGCCCCTGAGCATTTGATCATCAATGTA
EST: CGAAAGCTCTTGGCCACAGTTTCACTGTTTTTGCGAAAGACATGGTTGAG GCAATTTCATTCTCCAATATGTATGCCCCTGAGCATTTGATCATCAATGTAEST: gi|58607312|gb|CK035345.1|CK035345
genomic: CGAAAGCTCTTGGCCACAGTTTCACTGTTTTTGCGAAAGACATGGTTGAGgtaattcttc ... ccttatgtagGCAATTTCATTCTCCAATATGTATGCCCCTGAGCATTTGATCATCAATGTA
EST: CGAAAGCTCTTGGCCACAGTTTCACTGTTTTTGCGAAAGACATGGTTGAG GCAATTTCATTCTCCAATATGTATGCCCCTGAGCATTTGATCATCAATGTAEST: gi|29680233|gb|CB676508.1|CB676508
genomic: CGAAAGCTCTTGGCCACAGTTTCACTGTTTTTGCGAAAGACATGGTTGAGgtaattcttc ... ccttatgtagGCAATTTCATTCTCCAATATGTATGCCCCTGAGCATTTGATCATCAATGTA
EST: CGAAAGCTCTTGGCCACAGTTTCACTGTTTTTGCGAAAGACATGGTTGAG GCAATTTCATTCTCCAATATGTATGCCCCTGAGCATTTGATCATCAATGTAEST: gi|88222978|gb|CI222827.1|CI222827
genomic: CGAAAGCTCTTGGCCACAGTTTCACTGTTTTTGCGAAAGACATGGTTGAGgtaattcttc ... ccttatgtagGCAATTTCATTCTCCAATATGTATGCCCCTGAGCATTTGATCATCAATGTA
EST: TTCACTGTTTTTGCGAAAGACATGGTTGAG GCAATTTCATTCTCCAATATGTATGCCCCTGAGCATTTGATCATCAATGTAEST: gi|29662202|gb|CB658477.1|CB658477
genomic: TTCACTGTTTTTGCGAAAGACATGGTTGAGgtaattcttc ... ccttatgtagGCAATTTCATTCTCCAATATGTATGCCCCTGAGCATTTGATCATCAATGTA
EST: GGAAAGCTCTTGGCCACAGTTTCACTGTTTTTGCGAAAGACATGGTTGAG GCAATTTCATTCTCCAATATGTATGCCCCTGAGCATTTGATCATCAATGTAEST: gi|86481451|gb|CI124084.1|CI124084
genomic: CGAAAGCTCTTGGCCACAGTTTCACTGTTTTTGCGAAAGACATGGTTGAGgtaattcttc ... ccttatgtagGCAATTTCATTCTCCAATATGTATGCCCCTGAGCATTTGATCATCAATGTA
EST: CGAAAGCTCTTGGCCACAGTTTCACTGTTTTTGCGAAAGACATGGTTGAG GCAATTTCATTCTCCAATATGTATGCCCCTGAGCATTTGATCATCAATGTAEST: gi|86500662|gb|CI143295.1|CI143295
genomic: CGAAAGCTCTTGGCCACAGTTTCACTGTTTTTGCGAAAGACATGGTTGAGgtaattcttc ... ccttatgtagGCAATTTCATTCTCCAATATGTATGCCCCTGAGCATTTGATCATCAATGTA
EST: CGAAAGCTCTTGCCCACAGTTTCACTGTTTTTGCGAAAGACATGGTTGAG CCAATTTCATTCTCCAATATGTATGCCCCTGAGCATTTGATCATCAATGTAEST: gi|29685419|gb|CB681694.1|CB681694
genomic: CGAAAGCTCTTGGCCACAGTTTCACTGTTTTTGCGAAAGACATGGTTGAGgtaattcttc ... ccttatgtagGCAATTTCATTCTCCAATATGTATGCCCCTGAGCATTTGATCATCAATGTA
EST: CGAAAGCTCTTGGCCACAGTTTCACTGTTTTTGCGAAAGACATGGTTGAG GCAATTTCATTCTCCAATATGTATGCCCCTGAGCATTTGATCATCAATGTAEST: gi|86831296|gb|CI297565.1|CI297565
genomic: CGAAAGCTCTTGGCCACAGTTTCACTGTTTTTGCGAAAGACATGGTTGAGgtaattcttc ... ccttatgtagGCAATTTCATTCTCCAATATGTATGCCCCTGAGCATTTGATCATCAATGTA
EST: CGAAAGCTCTTGGCCACAGTTTCACTGTTTTTGCGAAAGACATGGTTGAG GCAATTTCATTCTCCAATATGTATGCCCCTGAGCATTTGATCATCAATGTAEST: gi|29663864|gb|CB660139.1|CB660139
genomic: CGAAAGCTCTTGGCCACAGTTTCACTGTTTTTGCGAAAGACATGGTTGAGgtaattcttc ... ccttatgtagGCAATTTCATTCTCCAATATGTATGCCCCTGAGCATTTGATCATCAATGTA
EST: CGAAAGCTCTTGGCCACAGTTTCACTGTTTTTGCGAAAGACATGGTTGAG GCAATTTCATTCTCCAATATGTATGCCCCTGAGCATTTGATCATCAATGTA
genomic: CGAAAGCTCTTGGCCACAGTTTCACTGTTTTTGCGAAAGACATGGTTGAGgtaattcttc ... ccttatgtagGCAATTTCATTCTCCAATATGTATGCCCCTGAGCATTTGATCATCAATGTA
atctattgccgttcccagggattgttgacaagccccctctttcttccttatgtagGCAATTTCATTCTCCAATATGTATGCCCCTGAGCATTTGATCATCAATGTAAAGGATGCTGAACAGTGGGAGGATCTTGTCGAGAATGCAG
tgttgac putative branch site (score: 19)
ccccctctttcttcct putative PPT
ttatgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattcttcattcctgcccactctcgaattatttataatttgtaaggcacgtactatacatcactggagtttgaggtcgtagaattttgcagcatgcatgaaggtaaatgaaaattatctgatctattgccgttcccagggattgttgacaagccccctctttcttccttatgtagGCAATTTCATTCTCCAATATGTATGCCCCTGAGCATTTGATCATCAATGTAAAGGATGCTGAACAGTGGGAGGATCTTGTCGAGAATGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT