1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtttgcatctcttccttgctagatgctagttctctcatctgtatctaaacttttttttagcccctttcgattgttccaagttccatgcctgagtgtattgccttgcttctttagGATCATGGTCGGCCTGCCATCATTGGAAAGTCGGGAATTGATTTTGAGGAGCCTTCTGTCGAAGGAGAAAGTTGATGGCGGTCTAGACTATAAGGAACTA
species | Oryza sativa |
transcript | LOC_Os01g12660.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AACCGACCCTTTGATCTTGATGAAGCTATCATTCGAAGGTTTGAGCGCAG GATCATGGTCGGCCTGCCATCATTGGAAAGTCGGGAATTGATTCTTGAGGAEST: gi|66917644|gb|CX104492.1|CX104492
genomic: AACCGACCCTTTGATCTTGATGAAGCTATCATTCGAAGGTTTGAGCGCAGgtttgcatct ... gcttctttagGATCATGGTCGGCCTGCCATCATTGGAAAGTCGGGAATTGATT-TTGAGGA
EST: CTTTGATCTTGATGAAGCTATCATTCGAAGGTTTGAGCGCAG GATCATGGTCGGCCTGCCATCATTGGAAAGTCGGGAATTGATTTTGAGGAGEST: gi|89163921|gb|CI101009.1|CI101009
genomic: CTTTGATCTTGATGAAGCTATCATTCGAAGGTTTGAGCGCAGgtttgcatct ... gcttctttagGATCATGGTCGGCCTGCCATCATTGGAAAGTCGGGAATTGATTTTGAGGAG
EST: AACCGACCCTTTGATCTTGATGAAGCTATCACTCGAAGGTTTGAGCGCAG GATCATGGTCGGCCTGCCATCATTGGAAAGTCGGGAATTGATTTTGAGGAGEST: gi|218499887|gb|FG958711.1|FG958711
genomic: AACCGACCCTTTGATCTTGATGAAGCTATCATTCGAAGGTTTGAGCGCAGgtttgcatct ... gcttctttagGATCATGGTCGGCCTGCCATCATTGGAAAGTCGGGAATTGATTTTGAGGAG
EST: AACCGACCCTTTGATCTTGATGAAGCTATCATTCGAAGGTTTGAGCGCAG GATCATGGTCGGCCTGCCATCATTGGAAAGTCGGGAATTGATTTTGAGGAG
genomic: AACCGACCCTTTGATCTTGATGAAGCTATCATTCGAAGGTTTGAGCGCAGgtttgcatct ... gcttctttagGATCATGGTCGGCCTGCCATCATTGGAAAGTCGGGAATTGATTTTGAGGAG
gcccctttcgattgttccaagttccatgcctgagtgtattgccttgcttctttagGATCATGGTCGGCCTGCCATCATTGGAAAGTCGGGAATTGATTTTGAGGAGCCTTCTGTCGAAGGAGAAAGTTGATGGCGGTCTAGACTATAAGGAACTA
ttgccttgcttcttt CT-rich tract
ttcttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgcatctcttccttgctagatgctagttctctcatctgtatctaaacttttttttagcccctttcgattgttccaagttccatgcctgagtgtattgccttgcttctttagGATCATGGTCGGCCTGCCATCATTGGAAAGTCGGGAATTGATTTTGAGGAGCCTTCTGTCGAAGGAGAAAGTTGATGGCGGTCTAGACTATAAGGAACTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA