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gtatggtcattcctgcttataagataccagaataatgctatgaagaccgtccttggttgtcagcattcttatacacaatgataatctttgtttttcatgggtagGTTGTGGATGCGCTTTGTGACATTGTTTCAGCCTCACCGACCAAGGCTTCAGCTGCTATCGTTCTGCAG
species | Oryza sativa |
transcript | LOC_Os01g08700.6 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCATCAGGGTTGGAGAAAG GTTGTGGATGCGCTTTGTGACATTGTTTCAGCCTCACCGACCAAGGCTTCAEST: gi|58689941|gb|CK078628.1|CK078628
genomic: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCATCAGGGTTGGAGAAAGgtatggtcat ... tcatgggtagGTTGTGGATGCGCTTTGTGACATTGTTTCAGCCTCACCGACCAAGGCTTCA
EST: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCATCAGGGTTGGAGAAAG GTTGTGGATGCGCTTTGTGACGTTGTTTCAGCCTCACCGACCAAGGCTTCAEST: gi|88689129|gb|CI732705.1|CI732705
genomic: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCATCAGGGTTGGAGAAAGgtatggtcat ... tcatgggtagGTTGTGGATGCGCTTTGTGACATTGTTTCAGCCTCACCGACCAAGGCTTCA
EST: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCATCAGGGTTGGAGAAAG GTTGTGGATGCGCTTTGTGACATTGTTTCAGCCTCACCGACCAAGGCTTCAEST: gi|33684724|gb|CF312963.1|CF312963
genomic: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCATCAGGGTTGGAGAAAGgtatggtcat ... tcatgggtagGTTGTGGATGCGCTTTGTGACATTGTTTCAGCCTCACCGACCAAGGCTTCA
EST: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCATCAGGGTTGGAGAAAG GTTGTGGATGCGCTTTGTGACATTGTTTCAGCCTCACCGACCAAGGCTTCAEST: gi|396941313|gb|HO188522.1|HO188522
genomic: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCATCAGGGTTGGAGAAAGgtatggtcat ... tcatgggtagGTTGTGGATGCGCTTTGTGACATTGTTTCAGCCTCACCGACCAAGGCTTCA
EST: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCATCAGGGTTGGAGAAAG GTTGTGGATGCGCTTTGTGACGTTGTTTCAGCCTCACCGACCAAGGCTTCAEST: gi|38481214|gb|CF965303.1|CF965303
genomic: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCATCAGGGTTGGAGAAAGgtatggtcat ... tcatgggtagGTTGTGGATGCGCTTTGTGACATTGTTTCAGCCTCACCGACCAAGGCTTCA
EST: TGCAGAAAGTA-ATCAGCTCATCAGGGTTGGAGAAAG GTTGTGGATGCGCTTTGTGACGTTGTTTCAGCGTCGGCGACCAAGGCTTCAEST: gi|88689326|gb|CI732902.1|CI732902
genomic: TGCAGAAAGTACATCAGCTCATCAGGGTTGGAGAAAGgtatggtcat ... tcatgggtagGTTGTGGATGCGCTTTGTGACATTGTTTCAGCCTCACCGACCAAGGCTTCA
EST: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCATCAGGGTTGGAGAAAG GTTGTGGATGCGCTTTGTGACATTGTTTCAGCCTCACCGACCAAGGCTTCAEST: gi|88690745|gb|CI734824.1|CI734824
genomic: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCATCAGGGTTGGAGAAAGgtatggtcat ... tcatgggtagGTTGTGGATGCGCTTTGTGACATTGTTTCAGCCTCACCGACCAAGGCTTCA
EST: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCATCAGGGTTGGAGAAAG GTTGTGGATGCGCTTTGTGACATTGTTTCAGCCTCACCGACCAAGGCTTCAEST: gi|33793269|gb|CF322515.1|CF322515
genomic: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCATCAGGGTTGGAGAAAGgtatggtcat ... tcatgggtagGTTGTGGATGCGCTTTGTGACATTGTTTCAGCCTCACCGACCAAGGCTTCA
EST: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCATCAGGGTTGGAGAAAG GTTGTGGATGCGCTTTGTGACATTGTTTCAGCCTCACCGACCAAGGCTTCAEST: gi|29668032|gb|CB664307.1|CB664307
genomic: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCATCAGGGTTGGAGAAAGgtatggtcat ... tcatgggtagGTTGTGGATGCGCTTTGTGACATTGTTTCAGCCTCACCGACCAAGGCTTCA
EST: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCATCAGGGTTGGAGAAAG GTTGTGGATGCGCTTTGTGACATTGTTTCAGCCTCACCGACCAAGGCTTCAEST: gi|88689955|gb|CI734034.1|CI734034
genomic: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCATCAGGGTTGGAGAAAGgtatggtcat ... tcatgggtagGTTGTGGATGCGCTTTGTGACATTGTTTCAGCCTCACCGACCAAGGCTTCA
EST: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCATCAGGGTTGGAGAAAG GTTGTGGATGCGCTTTGTGACATTGTTTCAGCCTCACCGACCAAGGCTTCAEST: gi|88691766|gb|CI733343.1|CI733343
genomic: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCATCAGGGTTGGAGAAAGgtatggtcat ... tcatgggtagGTTGTGGATGCGCTTTGTGACATTGTTTCAGCCTCACCGACCAAGGCTTCA
EST: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCATCAGGGTTGGAGAAAG GTTGTGGATGCGCTTTGTGACATTGTTTCAGCCTCACCGACCAAGGCTTCAEST: gi|88690455|gb|CI734534.1|CI734534
genomic: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCATCAGGGTTGGAGAAAGgtatggtcat ... tcatgggtagGTTGTGGATGCGCTTTGTGACATTGTTTCAGCCTCACCGACCAAGGCTTCA
EST: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCATCAGGGTTGGAGAAAG GTTGTGGATGCGCTTTGTGACATTGTTTCAGCCTCACCGACCAAGGCTTCAEST: gi|88691375|gb|CI733958.1|CI733958
genomic: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCATCAGGGTTGGAGAAAGgtatggtcat ... tcatgggtagGTTGTGGATGCGCTTTGTGACATTGTTTCAGCCTCACCGACCAAGGCTTCA
EST: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCATCAGGGTTGGAGAAAG GTTGTGGATGCGCTTTGTGACATTGTTTCAGCCTCACCGACCAAGGCTTCAEST: gi|86848173|gb|CI290653.1|CI290653
genomic: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCATCAGGGTTGGAGAAAGgtatggtcat ... tcatgggtagGTTGTGGATGCGCTTTGTGACATTGTTTCAGCCTCACCGACCAAGGCTTCA
EST: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCATCAGGGTTGGAGAAAG GTTGTGGATGCGCTTTGTGACATTGTTTCAGCCTCACCGACCAAGGCTTCAEST: gi|55410210|gb|CV722586.1|CV722586
genomic: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCATCAGGGTTGGAGAAAGgtatggtcat ... tcatgggtagGTTGTGGATGCGCTTTGTGACATTGTTTCAGCCTCACCGACCAAGGCTTCA
EST: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCATCAGGGTTGGAGAAAG GTTGTGGATGCGCTTTGTGACATTGTTTCAGCCTCACCGACCAAGGCTTCAEST: gi|58611835|gb|CK039547.1|CK039547
genomic: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCATCAGGGTTGGAGAAAGgtatggtcat ... tcatgggtagGTTGTGGATGCGCTTTGTGACATTGTTTCAGCCTCACCGACCAAGGCTTCA
EST: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCATCAGGGTTGGAGAAAG GTTGTGGATGCGCTTTGTGACEST: gi|29666878|gb|CB663153.1|CB663153
genomic: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCATCAGGGTTGGAGAAAGgtatggtcat ... tcatgggtagGTTGTGGATGCGCTTTGTGAC
EST: CAGAAAGTACATCAGCTCATCAGGGTTGGAGAAAG GTTGTGGATGCGCTTTGTGACATTGTTTCAGCCTCACCGACCAAGGCTTCAEST: gi|38477853|gb|CF961986.1|CF961986
genomic: CAGAAAGTACATCAGCTCATCAGGGTTGGAGAAAGgtatggtcat ... tcatgggtagGTTGTGGATGCGCTTTGTGACATTGTTTCAGCCTCACCGACCAAGGCTTCA
EST: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCATCAGGGTTGGAGAAAG GTTGTGGATGCGCTTTGTGACGTTGTTTCAGCCTCACCGACCAAGGCTTCAEST: gi|86885526|gb|CI318677.1|CI318677
genomic: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCATCAGGGTTGGAGAAAGgtatggtcat ... tcatgggtagGTTGTGGATGCGCTTTGTGACATTGTTTCAGCCTCACCGACCAAGGCTTCA
EST: ATGTCTGCAGAAAGTACATCAGCTCATCAGGGTTGGAGAAAG GTTGTGGATGCGCTTTGTGACATTGTTTCACCCTCACCGACCAAGGCTTCAEST: gi|88690675|gb|CI734754.1|CI734754
genomic: ATGTCTGCAGAAAGTACATCAGCTCATCAGGGTTGGAGAAAGgtatggtcat ... tcatgggtagGTTGTGGATGCGCTTTGTGACATTGTTTCAGCCTCACCGACCAAGGCTTCA
EST: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCATCAGGGTTGGAGAAAG GTTGTGGATGCGCTTTGTGACATTGTTTCAGCCTCACCGACCAAGGCTTCAEST: gi|88689073|gb|CI732649.1|CI732649
genomic: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCATCAGGGTTGGAGAAAGgtatggtcat ... tcatgggtagGTTGTGGATGCGCTTTGTGACATTGTTTCAGCCTCACCGACCAAGGCTTCA
EST: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCATCAGGGTTGGAGAAAG GTTGTGGATGCGCTTTGTGACATTGTTTCAGCCTCACCGACCAAGGCTTCAEST: gi|29657062|gb|CB653337.1|CB653337
genomic: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCATCAGGGTTGGAGAAAGgtatggtcat ... tcatgggtagGTTGTGGATGCGCTTTGTGACATTGTTTCAGCCTCACCGACCAAGGCTTCA
EST: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCATCAGGGTTGGAGAAAG GTTGTGGATGCGCTTTGTGACATTGTTTCAGCCTCACCGACCAAGGCTTCAEST: gi|8335705|gb|BE040522.1|BE040522
genomic: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCATCAGGGTTGGAGAAAGgtatggtcat ... tcatgggtagGTTGTGGATGCGCTTTGTGACATTGTTTCAGCCTCACCGACCAAGGCTTCA
EST: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCATCAGGGTTGGAGAAAG GTTGTGGATGCGCTTTGTGACGTTGTTTCAGCCTCACCGACCAAGGCTTCAEST: gi|86905138|gb|CI289285.1|CI289285
genomic: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCATCAGGGTTGGAGAAAGgtatggtcat ... tcatgggtagGTTGTGGATGCGCTTTGTGACATTGTTTCAGCCTCACCGACCAAGGCTTCA
EST: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCATCAGGGTTGGAGAAAG GTTGTGGATGCGCTTTGTGACATTGTTTCAGCCTCACCGACCAAGGCTTCA
genomic: AAATGCAGATGTCTGCAGAAAGTACATCAGCTCATCAGGGTTGGAGAAAGgtatggtcat ... tcatgggtagGTTGTGGATGCGCTTTGTGACATTGTTTCAGCCTCACCGACCAAGGCTTCA
tccttggttgtcagcattcttatacacaatgataatctttgtttttcatgggtagGTTGTGGATGCGCTTTGTGACATTGTTTCAGCCTCACCGACCAAGGCTTCAGCTGCTATCGTTCTGCAG
tctttgtttttcat CT-rich tract
ataatctttgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggtcattcctgcttataagataccagaataatgctatgaagaccgtccttggttgtcagcattcttatacacaatgataatctttgtttttcatgggtagGTTGTGGATGCGCTTTGTGACATTGTTTCAGCCTCACCGACCAAGGCTTCAGCTGCTATCGTTCTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG