1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtacaaaacaaatctctatcctactacatgtcatctcaagcacatgtatacctgatgagccatcattatacagCTTTCATAACAGCAGCAGCAACAATCAAACCAGTGACAATCCAAGCTTTCATGCCAG
species | Oryza sativa |
transcript | LOC_Os01g07740.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AACAGCAACAGTGGCAATCAGTTTGGCGATACTTCTGGCTTCCAAACCAG CTTTCATAACAGCAGCAGCAACAATCAAACCAGTGACAATCCAAGCTTTCAEST: gi|163920524|gb|EG709580.1|EG709580
genomic: AACAGCAACAGTGGCAATCAGTTTGGCGATACTTCTGGCTTCCAAACCAGgtacaaaaca ... cattatacagCTTTCATAACAGCAGCAGCAACAATCAAACCAGTGACAATCCAAGCTTTCA
EST: AACAGCAACAGTGGCAATCAGTTTGGCGATACTTCTGGCTTCCAAACCAG CTTTCATAACAGCAGCAGCAACAATCAAACCAGTGACAATCCAAGCTTTCAEST: gi|86437266|gb|CI118988.1|CI118988
genomic: AACAGCAACAGTGGCAATCAGTTTGGCGATACTTCTGGCTTCCAAACCAGgtacaaaaca ... cattatacagCTTTCATAACAGCAGCAGCAACAATCAAACCAGTGACAATCCAAGCTTTCA
EST: AACAGCAACAGTGGCAATCAGTCTGGCGATACTTCTGGCTTCCAAACCAG CTTTCATAACAGCAGCAGCAACAATCAAACCAGTGACAATCCAAGCTTTCAEST: gi|163929260|gb|EG711021.1|EG711021
genomic: AACAGCAACAGTGGCAATCAGTTTGGCGATACTTCTGGCTTCCAAACCAGgtacaaaaca ... cattatacagCTTTCATAACAGCAGCAGCAACAATCAAACCAGTGACAATCCAAGCTTTCA
EST: AACAGCAACAGTGGCAATCAGTTTGGCGATACTTCTGGCTTCCAAACCAG CTTTCATAACAGCAGCAGCAACAATCAAACCAGTGACAATCCAAGCTTTCAEST: gi|66913147|gb|CX099995.1|CX099995
genomic: AACAGCAACAGTGGCAATCAGTTTGGCGATACTTCTGGCTTCCAAACCAGgtacaaaaca ... cattatacagCTTTCATAACAGCAGCAGCAACAATCAAACCAGTGACAATCCAAGCTTTCA
EST: AACAGCAACAGTGGCAATCAGTTTGGCGATACTTCTGGCTTCCAAACCAG CTTTCATAACAGCAGCAGCAACAATCAAACCAGTGACAATCCAAGCTTTCAEST: gi|86437630|gb|CI119352.1|CI119352
genomic: AACAGCAACAGTGGCAATCAGTTTGGCGATACTTCTGGCTTCCAAACCAGgtacaaaaca ... cattatacagCTTTCATAACAGCAGCAGCAACAATCAAACCAGTGACAATCCAAGCTTTCA
EST: GGCAATCAGTTTGGCGATACTTCTGGCTTCCAAACCAG CTTTCATAACAGCAGCAGCAACAATCAAACCAGTGACAATCCAAGCTTTCA
genomic: GGCAATCAGTTTGGCGATACTTCTGGCTTCCAAACCAGgtacaaaaca ... cattatacagCTTTCATAACAGCAGCAGCAACAATCAAACCAGTGACAATCCAAGCTTTCA
tcctactacatgtcatctcaagcacatgtatacctgatgagccatcattatacagCTTTCATAACAGCAGCAGCAACAATCAAACCAGTGACAATCCAAGCTTTCATGCCAG
acctgat putative branch site (score: 4)
atcattata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaaaacaaatctctatcctactacatgtcatctcaagcacatgtatacctgatgagccatcattatacagCTTTCATAACAGCAGCAGCAACAATCAAACCAGTGACAATCCAAGCTTTCATGCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT