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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtagtggttattgcctgattagggcctgtggctaaaacatatgtttactaaattcagctttatcttttgtttatgtagTGATGAGCTTGAGAGATGTACAGACAATTTCCTGAAATTGACTAAATATCACCTTTCTACATTCAAG

Basic information

species Oryza sativa
transcript LOC_Os01g06270.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27577181|gb|CA999875.1|CA999875
EST:     ACGTGGCAGCTTCAGTCATCATATAATGAACAGAAGGAAAAGAGAACCAA                         TGATGAGCTTGAGAGATGTACAGACAATTTCCTGAAATTGACTAAATATCA
genomic: ACGTGGCAGCTTCAGTCATCATATAATGAACAGAAGGAAAAGAGAACCAAgtatgtagtg ... gtttatgtagTGATGAGCTTGAGAGATGTACAGACAATTTCCTGAAATTGACTAAATATCA
EST: gi|13806286|gb|AU181455.1|AU181455
EST:     ACGTGGCAGCTTCAGTCATCATATAATGAACAGAAGGAAAAGAGAACCAA                         TGATGAGCTTGAGAGATGTACAGACAATTTCCTGAAATTGACTAAATATCA
genomic: ACGTGGCAGCTTCAGTCATCATATAATGAACAGAAGGAAAAGAGAACCAAgtatgtagtg ... gtttatgtagTGATGAGCTTGAGAGATGTACAGACAATTTCCTGAAATTGACTAAATATCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcctgtggctaaaacatatgtttactaaattcagctttatcttttgtttatgtagTGATGAGCTTGAGAGATGTACAGACAATTTCCTGAAATTGACTAAATATCACCTTTCTACATTCAAG
                      tactaaa  putative branch site (score: 1)
                                  ctttatcttttgttt  putative PPT
         taaaacatatgtttac  TA-rich tract