Sequence
atgc intronic sequence ATGC exonic sequencegtaactactttatttctttcatttgtttctcgtgatttacagaagaacagatttatgccatacgcaattgcagGTTAATACTGAAGTTATTGCTGCTGAAGGCATGATTGTTACTGCTGGTGGAATTGATTGCCATGTTCACTTCATATGCCCTCAGTTGGCAGAAGAGGCAA
Basic information
species | Oryza sativa |
transcript | 13114.m00153 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: 13114.m00153 (Oryza sativa), 3'ss of exon 11
lower sequence: GRMZM2G465035_T01 (Zea mays), 3'ss of exon 2
gtaactactttatttctttcatttgtttctcgtgatttacagaagaacagatttatgccat-acgcaattgcagGTTAATACTGAAGTTATTGCTGCTGAAGGCATGATTGTTACTGCTGGTGGAATTGATTGCCATGTTCACTTCATATGCCCTCAGTTGGCAGAAGAGGCAA
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gtaactaact-atttactgaacgt-tccatattaatttgctaaagaaaagagataaaatttcatgaaattgcagGTCAATACTGAAGTTATTGCATATGAAGGCATGATTGTCACTGCTGGTGGCATAGATTGCCATGTCCACTTTATATGTCCTCAGTTGGCAGAAGAGGCAA
upper sequence: 13114.m00153 (Oryza sativa), 3'ss of exon 11
lower sequence: GRMZM2G461569_T01 (Zea mays), 3'ss of exon 8
gtaactactttatttctttcatttgtttctcgtgatttacagaagaacagatttatgccat-acgcaattgcagGTTAATACTGAAGTTATTGCTGCTGAAGGCATGATTGTTACTGCTGGTGGAATTGATTGCCATGTTCACTTCATATGCCCTCAGTTGGCAGAAGAGGCAA
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gtaactaact-atttactgaacgt-tccatattaatttgctaaagaaaagagataaaatttcatgaaattgcagGTCAATACTGAAGTTATTGCATCTGAAGGCATGATTGTCACTGCTGGTGGCATAGATTGCCATGTCCACTTTATATGTCCTCAGTTGGCAGAAGAGGCAA
upper sequence: 13114.m00153 (Oryza sativa), 3'ss of exon 11
lower sequence: GRMZM2G060656_T01 (Zea mays), 3'ss of exon 2
gtaactactttatttctttcatttgtttctcgtgatttacagaagaacagatttatgccat-acgcaattgcagGTTAATACTGAAGTTATTGCTGCTGAAGGCATGATTGTTACTGCTGGTGGAATTGATTGCCATGTTCACTTCATATGCCCTCAGTTGGCAGAAGAGGCAA
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gtaactaact-atttactgaacgt-ttcatattaatttgctaaagaaaagagataaaatttcatgaaattgcagGTCAATACTGAAGTTATTGCATCTGAAGGCATGATTGTCACTGCTGGTGGCATAGATTGCCATGTCCACTTTATATGTCCTCAGTTGGCAGAAGAGGCAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|29616662|gb|CB621674.1|CB621674EST: ACCCTGATGTCATGGACATGGATGGTGTTAATGAAGAGATGATTGTGGGG GTTAATACTGAAGTTATTGCTGCTGAAGGCATGATTGTTACTGCTGGTGGA
genomic: ACCCTGATGTCATGGACATGGATGGTGTTAATGAAGAGATGATTGTGGGGgtaactactt ... gcaattgcagGTTAATACTGAAGTTATTGCTGCTGAAGGCATGATTGTTACTGCTGGTGGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcatttgtttctcgtgatttacagaagaacagatttatgccatacgcaattgcagGTTAATACTGAAGTTATTGCTGCTGAAGGCATGATTGTTACTGCTGGTGGAATTGATTGCCATGTTCACTTCATATGCCCTCAGTTGGCAGAAGAGGCAA
agatttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaactactttatttctttcatttgtttctcgtgatttacagaagaacagatttatgccatacgcaattgcagGTTAATACTGAAGTTATTGCTGCTGAAGGCATGATTGTTACTGCTGGTGGAATTGATTGCCATGTTCACTTCATATGCCCTCAGTTGGCAGAAGAGGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG