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...tggatgtgatgatgttttgggatggagggagtaggattcttttgttttttgtggaataatcattgtttacctaatatatcatattcttataatttttcagAATATCTATTGTTACTGTAATCCAACTGTTGTCGGTGAATTGACATGGGGACTGAACTATGTCCTACATAAGTTGTTACCTCAAGAGCAAAGTTTAACTC
species | Oryza sativa |
transcript | LOC_Os12g42730.4 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ACTTAATTGTTCAAGATGTAGAGCTTAAAGATGTTATCGAGAAGAAACTT AATATCTATTGTTACTGTAATCCAACTGTTGTCGGTGAATTGACATGGGGAEST: gi|33683221|gb|CF311460.1|CF311460
genomic: ACTTAATTGTTCAAGATGTAGAGCTTAAAGATGTTATCGAGAAGAAACTTgtgagtttat ... aatttttcagAATATCTATTGTTACTGTAATCCAACTGTTGTCGGTGAATTGACATGGGGA
EST: ACTTAATTGTTCAAGATGTAGAGCTTAAAGATGTTATCGAGAAGAAACTT AATATCTATTGTTACTGTAATCCAACTGGTTGTCGGTGAATTGACATGGGGEST: gi|29677657|gb|CB673932.1|CB673932
genomic: ACTTAATTGTTCAAGATGTAGAGCTTAAAGATGTTATCGAGAAGAAACTTgtgagtttat ... aatttttcagAATATCTATTGTTACTGTAATCCAACTG-TTGTCGGTGAATTGACATGGGG
EST: ACTTAATTGTTCAAGATGTAGAGCTTAAAGATGTTATCGAGAAGAAACTT AATATCTATTGTTACTGTAATCCAACTGTTGTCGGTGAATTGACATGGGGAEST: gi|29680090|gb|CB676365.1|CB676365
genomic: ACTTAATTGTTCAAGATGTAGAGCTTAAAGATGTTATCGAGAAGAAACTTgtgagtttat ... aatttttcagAATATCTATTGTTACTGTAATCCAACTGTTGTCGGTGAATTGACATGGGGA
EST: ACTTAATTGTTCAAGATGTAGAGCTTAAAGATGTTATCGAGAAGAAACTT AATATCTATTGTTACTGTAATCCAACTGTTGTCGGTGAATTGACATGGGGAEST: gi|29658512|gb|CB654787.1|CB654787
genomic: ACTTAATTGTTCAAGATGTAGAGCTTAAAGATGTTATCGAGAAGAAACTTgtgagtttat ... aatttttcagAATATCTATTGTTACTGTAATCCAACTGTTGTCGGTGAATTGACATGGGGA
EST: TCAAGATGTAGAGCTTAAAGATGTTATCGAGAAGAAACTT AATATCTATTGTTACTGTAATCCAACTGTTGTCGGTGAATTGACATGGGGAEST: gi|29675653|gb|CB671928.1|CB671928
genomic: TCAAGATGTAGAGCTTAAAGATGTTATCGAGAAGAAACTTgtgagtttat ... aatttttcagAATATCTATTGTTACTGTAATCCAACTGTTGTCGGTGAATTGACATGGGGA
EST: ACTTAATTGTTCAAGATGTAGAGCTTAAAGATGTTATCGAGAAGAAACTT AATATCTATTGTTACTGTAATCCAACTGTTGTCGGTGAATTGACATGGGGAEST: gi|29679977|gb|CB676252.1|CB676252
genomic: ACTTAATTGTTCAAGATGTAGAGCTTAAAGATGTTATCGAGAAGAAACTTgtgagtttat ... aatttttcagAATATCTATTGTTACTGTAATCCAACTGTTGTCGGTGAATTGACATGGGGA
EST: ACTTAATTGTTCAAGATGTAGAGCTTAAAGATGTTATCGAGAAGAAACTT AATATCTATTGTTACTGTAATCCAACTGTTGTCGGTGAATTGACATGGGGAEST: gi|29680085|gb|CB676360.1|CB676360
genomic: ACTTAATTGTTCAAGATGTAGAGCTTAAAGATGTTATCGAGAAGAAACTTgtgagtttat ... aatttttcagAATATCTATTGTTACTGTAATCCAACTGTTGTCGGTGAATTGACATGGGGA
EST: ACTTAATTGTTCAAGATGTAGAGCTTAAAGATGTTATCGAGAAGAAACTT AATATCTATTGTTACTGTAATCCAACTGTTGTCGGTGAATTGACATGGGGAEST: gi|29639896|gb|CB644905.1|CB644905
genomic: ACTTAATTGTTCAAGATGTAGAGCTTAAAGATGTTATCGAGAAGAAACTTgtgagtttat ... aatttttcagAATATCTATTGTTACTGTAATCCAACTGTTGTCGGTGAATTGACATGGGGA
EST: ACTTAATTGTTCAAGATGTAGAGCTTAAAGATGTTATCGAGAAGAAACTT AATATCTATTGTTACTGTAATCCAACTGTTGTCGGTGAATTGACATGGGGAEST: gi|218485546|gb|FG969305.1|FG969305
genomic: ACTTAATTGTTCAAGATGTAGAGCTTAAAGATGTTATCGAGAAGAAACTTgtgagtttat ... aatttttcagAATATCTATTGTTACTGTAATCCAACTGTTGTCGGTGAATTGACATGGGGA
EST: ACTTAATTGTTCAAGATGTAGAGCTTAAAGATGTTATCGAGAAGAAACTT AATATCTATTGTTACTGTAATCCAACTGTTGTCGGTGAATTGACATGGGGAEST: gi|29674624|gb|CB670899.1|CB670899
genomic: ACTTAATTGTTCAAGATGTAGAGCTTAAAGATGTTATCGAGAAGAAACTTgtgagtttat ... aatttttcagAATATCTATTGTTACTGTAATCCAACTGTTGTCGGTGAATTGACATGGGGA
EST: GTTCAAGATGTAGAGCTTAAAGATGTTATCGAGAAGAAACTT AATATCTATTGTTACTGTAATCCAACTGTTGTCGGTGAATTGACATGGGGAEST: gi|29679034|gb|CB675309.1|CB675309
genomic: GTTCAAGATGTAGAGCTTAAAGATGTTATCGAGAAGAAACTTgtgagtttat ... aatttttcagAATATCTATTGTTACTGTAATCCAACTGTTGTCGGTGAATTGACATGGGGA
EST: ACTTAATTGTTCAAGATGTAGAGCTTAAAGATGTTATCGAGAAGAAACTT AATATCTATTGTTACTGTAATCCAACTGTTGTCGGTGAATTGACATGGGGA
genomic: ACTTAATTGTTCAAGATGTAGAGCTTAAAGATGTTATCGAGAAGAAACTTgtgagtttat ... aatttttcagAATATCTATTGTTACTGTAATCCAACTGTTGTCGGTGAATTGACATGGGGA
tttttgtggaataatcattgtttacctaatatatcatattcttataatttttcagAATATCTATTGTTACTGTAATCCAACTGTTGTCGGTGAATTGACATGGGGACTGAACTATGTCCTACATAAGTTGTTACCTCAAGAGCAAAGTTTAACTC
acctaat putative branch site (score: 3)
tttttc putative PPT
attgtttacctaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggatgtgatgatgttttgggatggagggagtaggattcttttgttttttgtggaataatcattgtttacctaatatatcatattcttataatttttcagAATATCTATTGTTACTGTAATCCAACTGTTGTCGGTGAATTGACATGGGGACTGAACTATGTCCTACATAAGTTGTTACCTCAAGAGCAAAGTTTAACTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG