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...tctgtgccagcttggtcttgatagcattgctatcagtaactacttcatcgagtactttcatgttgcataaattttatcctgaattcgtaatgctttgcagGGCACTGGAGATTTAACAACTGCCCTTCTACTAGGATGGAGTAAT
species | Oryza sativa |
transcript | LOC_Os12g40830.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CACCAGAACAATTTAAGATTGAGATACCCAAGATACCTGCATATTTCACG GGGCACTGGAGATTTAACAACTGEST: gi|427643|gb|D23776.1|D23776
genomic: CACCAGAACAATTTAAGATTGAGATACCCAAGATACCTGCATATTTCACGgtatgcactc ... tgctttgcagGG-CACTGGAGATTTAACAACTG
EST: CACCAGAACAATTTAAGATTGNGATACCCAAGATACCTGCATATTTCACG GGCACTGGAGATTTAACAACTGCCCTTCTACTAGGATGGNGTAATEST: gi|86885325|gb|CI317085.1|CI317085
genomic: CACCAGAACAATTTAAGATTGAGATACCCAAGATACCTGCATATTTCACGgtatgcactc ... tgctttgcagGGCACTGGAGATTTAACAACTGCCCTTCTACTAGGATGGAGTAAT
EST: ATACCTGCATATTTCACG GGCACTGGAGATTTAACAACTGCCCTTCTACTAGGATGGAGTAATEST: gi|13165352|gb|AU174149.1|AU174149
genomic: ATACCTGCATATTTCACGgtatgcactc ... tgctttgcagGGCACTGGAGATTTAACAACTGCCCTTCTACTAGGATGGAGTAAT
EST: CACCAGAACAATTTAAGATTGAGATACCCAAGATACCTGCATATTTCACG GGCACTGGAGATTTAACAACTGCCCTTCTACTAGGATGGAGTAATEST: gi|89185094|gb|CI049640.1|CI049640
genomic: CACCAGAACAATTTAAGATTGAGATACCCAAGATACCTGCATATTTCACGgtatgcactc ... tgctttgcagGGCACTGGAGATTTAACAACTGCCCTTCTACTAGGATGGAGTAAT
EST: CACCAGAACAATTTAAGATTGAGATACCCAAGATACCTGCATATTTCACG GGCACTGGAGATTTAACAACTGCCCTTCTACTAGGATGGAGTAATEST: gi|88543303|gb|CI473300.1|CI473300
genomic: CACCAGAACAATTTAAGATTGAGATACCCAAGATACCTGCATATTTCACGgtatgcactc ... tgctttgcagGGCACTGGAGATTTAACAACTGCCCTTCTACTAGGATGGAGTAAT
EST: TTAAGATTGAGATACCCAAGATACCTGCATATTTCACG GGCACTGGAGATTTAACAACTGCCCTTTTACTAGGATGGAGTAAT
genomic: TTAAGATTGAGATACCCAAGATACCTGCATATTTCACGgtatgcactc ... tgctttgcagGGCACTGGAGATTTAACAACTGCCCTTCTACTAGGATGGAGTAAT
catcgagtactttcatgttgcataaattttatcctgaattcgtaatgctttgcagGGCACTGGAGATTTAACAACTGCCCTTCTACTAGGATGGAGTAAT
ttgcataaattttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctgtgccagcttggtcttgatagcattgctatcagtaactacttcatcgagtactttcatgttgcataaattttatcctgaattcgtaatgctttgcagGGCACTGGAGATTTAACAACTGCCCTTCTACTAGGATGGAGTAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA