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gtaagtggcatgaacatgagagttttgttatgtttttgcgcagaatgttagtatattttgaacttacaaggttttcaatttctgtcatctcagGGGCATCATCTTCCTGAAACAAGGGGACTATGTCTTTCTGAAGAGCAAATTGTCAGAACG
species | Oryza sativa |
transcript | LOC_Os12g40490.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TCTTGGTTGAGAGACAGGCTCTAAATGAGGCTTTAGAAACTGAGAAAAAT GGGCATCATCTTCCTGAAACAAGGGGACTATGTCTTTCTGAAGAGCAAATTEST: gi|29637733|gb|CB642742.1|CB642742
genomic: TCTTGGTTGAGAGACAGGCTCTAAATGAGGCTTTAGAAACTGAGAAAAATgtaagtggca ... gtcatctcagGGGCATCATCTTCCTGAAACAAGGGGACTATGTCTTTCTGAAGAGCAAATT
EST: TCTTGGTTGAGAGACAGGCTCTAAATGAGGCTTTAGAAACTGAGAAAAAT GGGCATCATCTTCCTGAAACAAGGGGACTATGTCTTTCTGAAGAGCAAATT
genomic: TCTTGGTTGAGAGACAGGCTCTAAATGAGGCTTTAGAAACTGAGAAAAATgtaagtggca ... gtcatctcagGGGCATCATCTTCCTGAAACAAGGGGACTATGTCTTTCTGAAGAGCAAATT
cgcagaatgttagtatattttgaacttacaaggttttcaatttctgtcatctcagGGGCATCATCTTCCTGAAACAAGGGGACTATGTCTTTCTGAAGAGCAAATTGTCAGAACG
aacttac putative branch site (score: 16)
tttctgtc putative PPT
aatgttagtatatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtggcatgaacatgagagttttgttatgtttttgcgcagaatgttagtatattttgaacttacaaggttttcaatttctgtcatctcagGGGCATCATCTTCCTGAAACAAGGGGACTATGTCTTTCTGAAGAGCAAATTGTCAGAACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA