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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggacctactggctacttactatgttcttccagcaaaccttagctcagccatttcctacactatttatcagaattcgtcagagattaactttattagacataggacaccattggaccatccccatgatcataacggacgagctgaattcactgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGATTGCATCATGGCTGAAGCATAATTCAGACAACTATTTGCGCTGTTCCCAG

Basic information

species Oryza sativa
transcript LOC_Os12g37870.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g37870.1 (Oryza sativa), 3'ss of exon 10
lower sequence: GRMZM2G034083_T01 (Zea mays), 3'ss of exon 10
gtatggacctactggctacttactatgttcttcca-gcaaaccttagctcagccatttcctacactatt-tatcagaattcgtcagagattaactttattagacataggacaccattggaccatccccatgatcataacggacgagctgaattcactgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGATTGCATCATGGCTGAAGCATAATTCAGACAACTATTTGCGCTGTTCCCAG---
         ||    ||  |||   |  |  || |   |||  |     |   ||||||||  |      || ||      |  || |  | | |      | |     || ||  |     || ||| |||| ||     || |           || ||||||||| |||||||||||||| || |||||||| ||||||||  |||||||||||||||||||||| |   | ||| ||| | |  |  |||  |  ||   ||   
--------gtatgatctctttatgcttcttctcgatataaatatggtaccttgcatttcctgaaacgccataccatttcctgaaaggggatcattgggaccggctccatacccccataagagatgccc-tgattatgctcaacaaa----------tgcattgcagGTCTATGGACCAGAGGCGACCATGACTGGGATCTGCAAAGAAGCCATTGATTGCATCATGGCCG---CGTAAATCACAAATGTGGTTGTTCCATTTGAAGTCA

upper sequence: LOC_Os12g37870.1 (Oryza sativa), 3'ss of exon 10
lower sequence: AT1G09430.1 (Arabidopsis thaliana), 3'ss of exon 11
gtatggacctactggctacttact-atgttcttccagcaaaccttagctcagccatttcctacactatttatcagaattcgtcagagattaactttattagacataggacaccattggaccatccccatgatcataacggacgagctgaattcactgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGATTGCATCATGG---CTGAAGCATAATTCAGACAACTATTTGCGCTGTTCCCAG
               | | ||||| ||| | || |    || || | |  ||           |  | | ||     |  |||  |    || ||| | ||| | || |||    |||    | |  || |    |    || ||    ||| |    ||||||||||||||| ||||||||||||||||| ||||| ||||| | ||||||||| |||||||||    |||| ||||||   |  |||   |||   || |||    
----------gtaaccgaattacttatggttttactcacaatctaaacctaggagaaatggtgaaaactcat-----tctgtcgaa----aaatttctcagaaa-agaacatgtgtggttagttcgaat-actgaactttacaag---gattgat--gattgcagGTATATGGTCCAGAGGCAACAATGACGGGAATATGCAAACGAGCCATTGACTGCATCATGTTGCCTGATGCATAACCTACCCAAACCTTTTATCTCTTCT---

upper sequence: LOC_Os12g37870.1 (Oryza sativa), 3'ss of exon 10
lower sequence: Vv14s0060g00550.t01 (Vitis vinifera), 3'ss of exon 11
gtatggacctactggctacttactatgttcttccagcaaaccttagctcagccatttcctacactatttatcagaattcgtcagagattaactttattagacataggacaccattggaccatccccatgatcataacggacgagctgaattcactgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGATTGCATCATGGCTGAAGCATAAT-TCAGACAACTATTTGCGCTGTTCCCAG
                                                           |  |  ||   ||  | ||| |   || ||  |  | | |    || |||    | |   |||  |  |      | |      | |    ||| |   |||||||| ||||| || |||||||||||||| || || |||||||| || ||||||||||||||| ||   || |||| ||  || | | |     ||  | ||  
----------------------------------------------------------ttgaaagatgcttcttatttcctagaaggtttgcaatgtaa----tacgactttctagtttcataactgtagcttgatcatgtttgtt--tctcattctgttgcagGTTTATGGGCCTGAGGCAACAATGACCGGGATTTGCAAGCAGGCAATTGATTGCATCATGTCTACTGCCTAATATCCCACCATTCTCGATTCTCCTTCCT-

upper sequence: LOC_Os12g37870.1 (Oryza sativa), 3'ss of exon 10
lower sequence: PP1S7_156V6.2 (Physcomitrella patens), 3'ss of exon 12
-------------gtatggacctactggcta--cttactatgttcttccagcaaac-cttagctcagccatttcctacactatttatcaga-------attcgtcagagattaactttattagacataggacaccattggaccatccccatgatc--ataacggacgagctgaattcactgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGATTGCATCATGGCTGAAGCATA-ATTCAGACAACTATTTGCGCTGTTCCCAG
              | |||   |     |    ||  || |||  ||    ||    || | | |    ||||  |      || ||   |       || |  |  |||  ||  |   | ||   ||   ||   |    | ||| | ||| |  |||     |  |  |  || ||      |||||||||||||||||| ||||  ||||||||||| ||||||||||| || || | |||||     |  ||||| |   | |        |   |  || ||| 
gttaggcacaacgatttgggtttcagaacatgtctcgctttgtgtttttcacactttctcaacactcgtattttgtttttagttcatagaacaatgagatacaacgaagaacaaactggcttgatgaagtgtactcct----cgtccgcgtgaaccaatatttttcttgtcgtcttgacctgga-gcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGACTACATCAGCATCGCCGCATAGACAAAAATGTAGGGGTCTTCAATTGCCA-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86844349|gb|CI337680.1|CI337680
EST:     CCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAG                         GTATATGGACCAGAGGCAACAATGACTGGAATCTCCAAGCAAGCCATTGAT
genomic: GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAGgtatggacct ... tgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
EST: gi|86435092|gb|CI106325.1|CI106325
EST:     GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCCATTGAG                         GTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
genomic: GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAGgtatggacct ... tgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
EST: gi|89190783|gb|CI392636.1|CI392636
EST:     GCCTTTCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAG                         GTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
genomic: GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAGgtatggacct ... tgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
EST: gi|163920630|gb|EG714521.1|EG714521
EST:     GCCTTGCCAAAATGCGTACACTAGTTGCAGAACTTGGTGTTCCAATTGAG                         GTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
genomic: GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAGgtatggacct ... tgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
EST: gi|86538603|gb|CI178809.1|CI178809
EST:     GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAG                         GTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
genomic: GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAGgtatggacct ... tgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
EST: gi|89168153|gb|CI109357.1|CI109357
EST:     GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAG                         GTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
genomic: GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAGgtatggacct ... tgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
EST: gi|88248192|gb|CI248041.1|CI248041
EST:     GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAG                         GTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
genomic: GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAGgtatggacct ... tgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
EST: gi|86873602|gb|CI329980.1|CI329980
EST:     GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAG                         GTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
genomic: GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAGgtatggacct ... tgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
EST: gi|88974793|gb|CI023089.1|CI023089
EST:     GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAG                         GTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
genomic: GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAGgtatggacct ... tgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
EST: gi|89194405|gb|CI116842.1|CI116842
EST:     GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAG                         GTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
genomic: GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAGgtatggacct ... tgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
EST: gi|33691853|gb|CF320092.1|CF320092
EST:     GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAG                         GTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
genomic: GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAGgtatggacct ... tgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
EST: gi|89192020|gb|CI393377.1|CI393377
EST:     CCTTGCCAAAATGCGTACAGCTAGGTGCAGAACTTGGTGTTCCAATTGAG                         GTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
genomic: CCTTGCCAAAATGCGTACA-CTAGGTGCAGAACTTGGTGTTCCAATTGAGgtatggacct ... tgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
EST: gi|33807860|gb|CF329822.1|CF329822
EST:     GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAG                         GTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
genomic: GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAGgtatggacct ... tgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
EST: gi|33691852|gb|CF320091.1|CF320091
EST:     GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAG                         GTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
genomic: GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAGgtatggacct ... tgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
EST: gi|88252289|gb|CI350717.1|CI350717
EST:     GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAG                         GTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
genomic: GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAGgtatggacct ... tgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
EST: gi|33654437|gb|CF277051.1|CF277051
EST:     GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAG                         GTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
genomic: GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAGgtatggacct ... tgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
EST: gi|55409660|gb|CV722036.1|CV722036
EST:     GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAG                         GTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
genomic: GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAGgtatggacct ... tgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
EST: gi|88835204|gb|CI370507.1|CI370507
EST:     GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAG                         GTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
genomic: GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAGgtatggacct ... tgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
EST: gi|13807582|gb|AU181999.1|AU181999
EST:     GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAG                         GTATATGGACCAGAGGCAACAATGACTGGAATNTGCAAGCAAGCCATTGAT
genomic: GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAGgtatggacct ... tgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
EST: gi|88958825|gb|CI381628.1|CI381628
EST:     GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAG                         GTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
genomic: GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAGgtatggacct ... tgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
EST: gi|88256470|gb|CI358858.1|CI358858
EST:     GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAG                         GTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
genomic: GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAGgtatggacct ... tgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
EST: gi|88252101|gb|CI350529.1|CI350529
EST:     GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAG                         GTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
genomic: GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAGgtatggacct ... tgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
EST: gi|88958869|gb|CI381672.1|CI381672
EST:     GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAG                         GTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
genomic: GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAGgtatggacct ... tgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
EST: gi|86600480|gb|CI356237.1|CI356237
EST:     GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAG                         GTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCACTTGA
genomic: GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAGgtatggacct ... tgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCA-TTGA
EST: gi|88297067|gb|CI542779.1|CI542779
EST:     CACTAGGTGCAGAACTTGGTGTTCCAATTGAG                         GTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
genomic: CACTAGGTGCAGAACTTGGTGTTCCAATTGAGgtatggacct ... tgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
EST: gi|88837529|gb|CI078889.1|CI078889
EST:     GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAG                         GTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
genomic: GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAGgtatggacct ... tgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
EST: gi|14714109|gb|AU198048.1|AU198048
EST:     GCCTTGCCAAAATGNGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAG                         GTATATGGACCAGAGGCAACAATGACTGGAATNTGCAAGCAAGCCATTGAT
genomic: GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAGgtatggacct ... tgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
EST: gi|86430220|gb|CI082643.1|CI082643
EST:     GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAG                         GTATACGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
genomic: GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAGgtatggacct ... tgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
EST: gi|88988070|gb|CI036040.1|CI036040
EST:     GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAG                         GTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
genomic: GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAGgtatggacct ... tgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
EST: gi|88272743|gb|CI386598.1|CI386598
EST:     GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAG                         GTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
genomic: GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAGgtatggacct ... tgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
EST: gi|87021578|gb|CI275977.1|CI275977
EST:     GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAG                         GTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
genomic: GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAGgtatggacct ... tgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
EST: gi|88852260|gb|CI374028.1|CI374028
EST:     GCCTTGCCAAAATGCGTACGCTAGGTGCAGAACTTGGTGTTCCAATTGAG                         GTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
genomic: GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAGgtatggacct ... tgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
EST: gi|86879910|gb|CI339987.1|CI339987
EST:     GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAG                         GTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
genomic: GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAGgtatggacct ... tgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
EST: gi|29662348|gb|CB658623.1|CB658623
EST:     CCTTGCCAAAATGCGTAC-CATAGGGGCAGAACTTGGTGTTCCAATTGAG                         GTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
genomic: CCTTGCCAAAATGCGTACAC-TAGGTGCAGAACTTGGTGTTCCAATTGAGgtatggacct ... tgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
EST: gi|88275977|gb|CI396581.1|CI396581
EST:     GCCTTGCCAAAATGCGTACACTAGGTTCAGAACTTGGTGTTCCAATTGAG                         GTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
genomic: GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAGgtatggacct ... tgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
EST: gi|29680113|gb|CB676388.1|CB676388
EST:     GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAG                         GTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
genomic: GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAGgtatggacct ... tgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
EST: gi|29638061|gb|CB643070.1|CB643070
EST:     GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAG                         GTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
genomic: GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAGgtatggacct ... tgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
EST: gi|88449155|gb|CI560616.1|CI560616
EST:     GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAG                         GTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
genomic: GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAGgtatggacct ... tgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
EST: gi|86883369|gb|CI337989.1|CI337989
EST:     GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAG                         GTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
genomic: GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAGgtatggacct ... tgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
EST: gi|88276042|gb|CI396646.1|CI396646
EST:     GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAG                         GTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
genomic: GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAGgtatggacct ... tgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
EST: gi|86886730|gb|CI334644.1|CI334644
EST:     GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAG                         GTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
genomic: GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAGgtatggacct ... tgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
EST: gi|29669994|gb|CB666269.1|CB666269
EST:     GCCTTGCCAAAATGCGTACCCTAGGTGCAGAACTTGGTGTTCCAATTGAG                         GTATATGGACCAGAGGCAACAATGACTGGAATTTGCAAGCAAGCCATTGAT
genomic: GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAGgtatggacct ... tgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
EST: gi|86852661|gb|CI321781.1|CI321781
EST:     GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAG                         GTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
genomic: GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAGgtatggacct ... tgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
EST: gi|86488989|gb|CI131622.1|CI131622
EST:     GCCTTGCCGAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAG                         GTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
genomic: GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAGgtatggacct ... tgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
EST: gi|88248053|gb|CI246671.1|CI246671
EST:     GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAG                         GTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
genomic: GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAGgtatggacct ... tgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
EST: gi|702482|gb|D48773.1|D48773
EST:     GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAG                         GTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
genomic: GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAGgtatggacct ... tgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
EST: gi|88257551|gb|CI360137.1|CI360137
EST:     GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAG                         GTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
genomic: GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAGgtatggacct ... tgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
EST: gi|89165688|gb|CI102778.1|CI102778
EST:     GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAG                         GTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
genomic: GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAGgtatggacct ... tgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
EST: gi|11025636|gb|AU162237.1|AU162237
EST:     CCTTG-CAANAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAG                         GTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
genomic: CCTTGCCAA-AATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAGgtatggacct ... tgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
EST: gi|88245210|gb|CI245059.1|CI245059
EST:     GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAG                         GTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
genomic: GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAGgtatggacct ... tgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
EST: gi|88439103|gb|CI538655.1|CI538655
EST:     GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAG                         GTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
genomic: GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAGgtatggacct ... tgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
EST: gi|86871837|gb|CI332009.1|CI332009
EST:     GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAG                         GTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
genomic: GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAGgtatggacct ... tgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
EST: gi|88276531|gb|CI397135.1|CI397135
EST:     GCCTCGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAG                         GTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
genomic: GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAGgtatggacct ... tgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
EST: gi|88297159|gb|CI545249.1|CI545249
EST:     GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAG                         GTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
genomic: GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAGgtatggacct ... tgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
EST: gi|86825824|gb|CI362316.1|CI362316
EST:     CTTGCCAAAATGCGTACACTAGGTGCAAGAACTTGGTGTTCCAAATTGAG                         GTATATGGACCAGAGGCAACAAATGACTGGAATCTGCAAGCAAGCCATTG
genomic: CTTGCCAAAATGCGTACACTAGGTGC-AGAACTTGGTGTTCC-AATTGAGgtatggacct ... tgaattgcagGTATATGGACCAGAGGCAAC-AATGACTGGAATCTGCAAGCAAGCCATTG
EST: gi|86908638|gb|CI318965.1|CI318965
EST:     GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAG                         GTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
genomic: GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAGgtatggacct ... tgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
EST: gi|86839143|gb|CI331440.1|CI331440
EST:     GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAG                         GTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT
genomic: GCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAGgtatggacct ... tgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 68 (upstream exon), 65 (downstream exon)
Score: 115

TGCACGGATGAACATTTACGTTCGGAGAGGTGGTCCAAACTACCAAACTGGCCTTGCCAAAATGCGTACACTAGGTGCAGAACTTGGTGTTCCAATTGAGgtatggacct ... tgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGATTGCATCATGGCTGAAGCATAATTCAGACAACTATTTGCGCTGTTCCCAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accattggaccatccccatgatcataacggacgagctgaattcactgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGATTGCATCATGGCTGAAGCATAATTCAGACAACTATTTGCGCTGTTCCCAG
                     tcataac  putative branch site (score: 115)
                    atcataa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatggacctactggctacttactatgttcttccagcaaaccttagctcagccatttcctacactatttatcagaattcgtcagagattaactttattagacataggacaccattggaccatccccatgatcataacggacgagctgaattcactgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGATTGCATCATGGCTGAAGCATAATTCAGACAACTATTTGCGCTGTTCCCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT