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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgtttcacctcacgtcctcattctcagttctgtgtataaacagtttcatttttgtaatgcatttcctttatttgtttagTTGTGGAAGGAGGATCAAACTGGAGCATGGGCCAAAGGCAGCTACTTTGCTTGGGCCGTGCCCTCCTGCGACGAAGCCGCATCTTGATCCTTGACGAGGC

Basic information

species Oryza sativa
transcript LOC_Os12g37580.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g37580.1 (Oryza sativa), 3'ss of exon 10
lower sequence: GLYMA16G28900.1 (Glycine max), 3'ss of exon 11
gtatgtgtttcacctcacgtcctcattctcagttctgtgtataaacagtttcatttttg--taatgcatttcctttatttgtt------tagTTGTGGAAGGAGGATCAAACTGGAGCATGGGCCAAAGGCAGCTACTTTGCTTGGGCCGTGCCCTCCTGCGACGAAGCCGCATCTTGATCCTTGACGAGGC
        | ||| |  | || | ||  | |  | |||  | ||  | |||  ||  |   | ||  |      | || ||||      ||||||| ||||  |||||||||||||||||||| ||||||||  || |||| ||||| ||||  ||  |  |  ||||  | || ||| | || || || ||
-------gtacacttt-catcattatggt-aactatgt-cacaagtactttttttcctagttgataaaaactagtaatatgttgttacatagTTGTTGAAGATGGATCAAACTGGAGCATGGGACAAAGGCAATTATTTTGTTTGGGGCGTGTTCTTTTAAGGAGAAGTAGGATATTGGTGCTGGATGAAGC

upper sequence: LOC_Os12g37580.1 (Oryza sativa), 3'ss of exon 10
lower sequence: GLYMA16G28910.1 (Glycine max), 3'ss of exon 11
gtatgtgtttcacctcacgtcctcattctcagttctgtgtataaacagtttcatttttgtaatgcatttcctttatttgtttagTTGTGGAAGGAGGATCAAACTGGAGCATGGGCCAAAGGCAGCTACTTTGCTTGGGCCGTGCCCTCCTGCGACGAAGCCGCATCTTGATCCTTGACGAGGC
|||    ||   | |||  |  | | | |  |    |||  ||       |  || |  |||    |  |   |   ||   |||||| ||||  |||||||||||||||||||| ||||||||  |  |||| ||||| ||||| ||  |  |  ||||  | || ||| | || || || ||
gtaaactttcatcatcatatgataactatgtgacaagtgcttattt--cctagttgtaataactagtaacaaattgatgcacagTTGTTGAAGATGGATCAAACTGGAGCATGGGACAAAGGCAATTGTTTTGTTTGGGGCGTGCTCTTTTAAGGAGAAGTAGGATATTGGTGCTGGATGAAGC

upper sequence: LOC_Os12g37580.1 (Oryza sativa), 3'ss of exon 10
lower sequence: Vv16s0050g02480.t01 (Vitis vinifera), 3'ss of exon 10
gtatgtgtttcacctcacgtcctcatt-ctcagttctgtgtataaacagtttcatttttgtaatgcatttcc-tttatttgttt-agTTGTGGAAGGAGGATCAAACTGGAGCATGGGCCAAAGGCAGCTACTTTGCTTGGGCCGTGCCCTCCTGCGACGAAGCCGCATCTTGATCCTTGACGAGGC
      ||   |  ||| |  || | | | |||    ||||        || |||| | |  ||  ||     | | ||||||| ||||| |||||| |||||||||||||||||||| || ||||||||  | || ||||| ||||||||| ||||| ||||||| ||  || | ||||| || ||
------gtaagatttcaagctcttagtacacagg---gtgtccctttttttccattgtagccattaataagggtctgtttgtttcagTTGCGGAAGGTGGATCAAACTGGAGCATGGGGCAGAGGCAGCTCTTCTGTTTGGGGCGTGCCCTCTTGCGAAGAAGCCGGATACTGGTTCTTGATGAAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagttctgtgtataaacagtttcatttttgtaatgcatttcctttatttgtttagTTGTGGAAGGAGGATCAAACTGGAGCATGGGCCAAAGGCAGCTACTTTGCTTGGGCCGTGCCCTCCTGCGACGAAGCCGCATCTTGATCCTTGACGAGGC
                                     tttcctttatttgttt  CT-rich tract
                   tttcatttttgtaat  TA-rich tract