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gtaattcagatatcttgatgttgattcattttagaatatttacatttttacattagttcatccagtgtgttattgactcagttattaaagGTTGTTTCAGGAGGTGTTGCATCAAACCAGTATGTCAGAACTCATTTGAATCAGATCGCTGAGAAGAATGGCCTACAGCTCGTATGCCCTCCCCCAAAGC
species | Oryza sativa |
transcript | LOC_Os12g29990.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AGCGAGCAGTTGAATGGGCATTGAAGATGGAGCCTTCTATTAAATACTTT GTTGTTTCAGGAGGTGTTGCATCAAACCAGTATGTCAGAACTCATTTGAATEST: gi|58688007|gb|CK076694.1|CK076694
genomic: AGCGAGCAGTTGAATGGGCATTGAAGATGGAGCCTTCTATTAAATACTTTgtaattcaga ... gttattaaagGTTGTTTCAGGAGGTGTTGCATCAAACCAGTATGTCAGAACTCATTTGAAT
EST: AGCGAGCAGTTGAATGGGCATTGAAGATGGAGCCTTCTATTAAATACTTT GTTGTTTCAGGAGGCGTTGCATCAAACCAGTATGTCAGAACTCATTTGAAT
genomic: AGCGAGCAGTTGAATGGGCATTGAAGATGGAGCCTTCTATTAAATACTTTgtaattcaga ... gttattaaagGTTGTTTCAGGAGGTGTTGCATCAAACCAGTATGTCAGAACTCATTTGAAT
atatttacatttttacattagttcatccagtgtgttattgactcagttattaaagGTTGTTTCAGGAGGTGTTGCATCAAACCAGTATGTCAGAACTCATTTGAATCAGATCGCTGAGAAGAATGGCCTACAGCTCGTATGCCCTCCCCCAAAGC
tattgac putative branch site (score: 2)
tacatttttacatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattcagatatcttgatgttgattcattttagaatatttacatttttacattagttcatccagtgtgttattgactcagttattaaagGTTGTTTCAGGAGGTGTTGCATCAAACCAGTATGTCAGAACTCATTTGAATCAGATCGCTGAGAAGAATGGCCTACAGCTCGTATGCCCTCCCCCAAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC