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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgatttccatatcaagttaatacattcatcgtctattatgtttgatacatgaatctgattgctttattcttcatgcagAATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTTTTGCAAGGTCTGTTAAGGTATGATCCAGCTAGCCGCCTAACAGCACAAG

Basic information

species Oryza sativa
transcript LOC_Os12g27520.4
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g27520.4 (Oryza sativa), 3'ss of exon 10
lower sequence: GRMZM2G063792_T02 (Zea mays), 3'ss of exon 7
gtatgatttccatatca-agttaatacattcatcgtctattatgtttgatacatgaatctgattgctttattcttcatg--cagAATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTTTTGCAAGGTCTGTTAAGGTATGATCCAGCTAGCCGCCTAACAGCACAAG
|||||  ||    || | ||  || ||||  ||  ||| |  |||   ||    |    ||  || |||||   | |||  ||||||||||||||||||||||| || ||  ||| ||| || |||||||  ||||||||||| ||  | | |||||| ||||| |||||  ||||||||| ||
gtatgtcttaacaatgataggcaaaacatgtatt-tctgtc-tgtagcatgtgagctaatgtctg-tttatgaattatgaacagAATCTGGTGATGCAAAATGTGGACCAGGCTGCGGGAGATTTCATTGGTCTTTTGCAAGGGCTCCTGAAGTATGACCCAGCAAGCCGTTTAACAGCACGAG

upper sequence: LOC_Os12g27520.4 (Oryza sativa), 3'ss of exon 10
lower sequence: GRMZM2G179308_T04 (Zea mays), 3'ss of exon 7
gtatgatttccatat-caagttaatacattcatcgtctattatgtttgatacatgaatctgattgctttattcttcatgcagAATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTTTTGCAAGGTCTGTTAAGGTATGATCCAGCTAGCCGCCTAACAGCACAAG
||||| |||    || |  | |||  |||||||  | || | ||  |   || |||| || |   || | || |    |||||| ||||||||||||||||| |||||  |||  || || |||||||||||||||||||| ||| | | |||||||||| | |||||  ||||||||| ||
gtatgtttttgcaatgcttgataaagcattcat--tttagtttg--tagcacgtgaaacttaagtctatgtt-tatgggcagAACCTGGTGATGCAAAATGTGGATCAAGCTGCAGGAGATTTCATTGACCTTTTGCAAGGGCTGCTGAAGTATGATCCATCAAGCCGTTTAACAGCACGAG

upper sequence: LOC_Os12g27520.4 (Oryza sativa), 3'ss of exon 10
lower sequence: Vv01s0137g00580.t01 (Vitis vinifera), 3'ss of exon 11
-----------------------------------------------------------gtatgatttccatatcaagttaatacattcatcgtctatt---atgtttgatacatgaatctgattgctttattcttcatgcagAATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTTTTGCAAGGTCTGTTAAGGTATGATCCAGCTAGCCGCCTAACAGCACAAG
                                                              |  |     |   ||   |||   |  ||  | || |    | || | | |   ||| || ||||||  ||      ||||||||| || |||||| |||| ||||||||||  || ||  | ||||||||||||||||||||  | |||||||| ||  | | | | || ||||| ||||
gtgtgtacttatggttttatggctttagcattgttttgttttttcaattccatatttgaaggtcctcattgtgaaaaacgaatgggtctattttttactcctgttttagtttctcaaatttgtttgcttccttg-----gcagAATCTAGTTATGCAACATGTGGATCATTCTGCCGGAGATCTTATTGACCTTTTGCAAGGTCTTCTTAGGTATGACCCTTCCAACAGACTCACAGCTCAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88285981|gb|CI515105.1|CI515105
EST:     ATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAG                         AATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
genomic: ATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAGgtatgatttc ... cttcatgcagAATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
EST: gi|88256837|gb|CI354618.1|CI354618
EST:     GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAG                         AATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
genomic: GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAGgtatgatttc ... cttcatgcagAATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
EST: gi|88218683|gb|CI218532.1|CI218532
EST:     GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAG                         AATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
genomic: GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAGgtatgatttc ... cttcatgcagAATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
EST: gi|29632958|gb|CB637967.1|CB637967
EST:     GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAG                         AATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
genomic: GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAGgtatgatttc ... cttcatgcagAATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
EST: gi|58030560|gb|CX728103.1|CX728103
EST:     GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAG                         AATCTGGTGATGCAAAATGTAGATCATTCTNNNNNNNAGTTCATTGACCTT
genomic: GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAGgtatgatttc ... cttcatgcagAATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
EST: gi|29661588|gb|CB657863.1|CB657863
EST:     GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAG                         AATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
genomic: GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAGgtatgatttc ... cttcatgcagAATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
EST: gi|88286012|gb|CI515136.1|CI515136
EST:     GATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAG                         AATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
genomic: GATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAGgtatgatttc ... cttcatgcagAATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
EST: gi|86250790|gb|CI007653.1|CI007653
EST:     GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAG                         AATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
genomic: GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAGgtatgatttc ... cttcatgcagAATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
EST: gi|86871025|gb|CI326844.1|CI326844
EST:     GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAG                         AATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
genomic: GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAGgtatgatttc ... cttcatgcagAATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
EST: gi|88319203|gb|CI513267.1|CI513267
EST:     NTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAG                         AATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
genomic: GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAGgtatgatttc ... cttcatgcagAATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
EST: gi|86421246|gb|CI057235.1|CI057235
EST:     GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAG                         AATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
genomic: GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAGgtatgatttc ... cttcatgcagAATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
EST: gi|88849216|gb|CI087738.1|CI087738
EST:     GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAG                         AATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
genomic: GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAGgtatgatttc ... cttcatgcagAATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
EST: gi|29670716|gb|CB666991.1|CB666991
EST:     GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAG                         AATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
genomic: GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAGgtatgatttc ... cttcatgcagAATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
EST: gi|88290181|gb|CI550403.1|CI550403
EST:     GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAG                         AATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
genomic: GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAGgtatgatttc ... cttcatgcagAATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
EST: gi|86869552|gb|CI346412.1|CI346412
EST:     GCCACGTCTTCAG                         AATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
genomic: GCCACGTCTTCAGgtatgatttc ... cttcatgcagAATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
EST: gi|29660874|gb|CB657149.1|CB657149
EST:     GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAG                         AATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
genomic: GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAGgtatgatttc ... cttcatgcagAATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
EST: gi|88288211|gb|CI515355.1|CI515355
EST:     GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAG                         AATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
genomic: GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAGgtatgatttc ... cttcatgcagAATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
EST: gi|24208276|gb|AU225303.1|AU225303
EST:     GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAG                         AATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
genomic: GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAGgtatgatttc ... cttcatgcagAATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
EST: gi|88296709|gb|CI540061.1|CI540061
EST:     GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAG                         AATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
genomic: GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAGgtatgatttc ... cttcatgcagAATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
EST: gi|88319407|gb|CI515868.1|CI515868
EST:     GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAN                         AATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
genomic: GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAGgtatgatttc ... cttcatgcagAATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
EST: gi|88333223|gb|CI641066.1|CI641066
EST:     GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAG                         AATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
genomic: GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAGgtatgatttc ... cttcatgcagAATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
EST: gi|88453390|gb|CI563269.1|CI563269
EST:     GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAG                         AATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
genomic: GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAGgtatgatttc ... cttcatgcagAATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
EST: gi|88288301|gb|CI515445.1|CI515445
EST:     GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAG                         AATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
genomic: GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAGgtatgatttc ... cttcatgcagAATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
EST: gi|88427834|gb|CI554342.1|CI554342
EST:     GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAG                         AATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
genomic: GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAGgtatgatttc ... cttcatgcagAATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
EST: gi|86494975|gb|CI137608.1|CI137608
EST:     GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAG                         AATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
genomic: GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAGgtatgatttc ... cttcatgcagAATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
EST: gi|88981415|gb|CI027033.1|CI027033
EST:     GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAG                         AATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
genomic: GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAGgtatgatttc ... cttcatgcagAATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
EST: gi|13895818|gb|C23622.2|C23622
EST:     GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAG                         AATCTGGTGATGCAAAATGTNGATCATTCTGGGGGCGAGTTCATTGACCTT
genomic: GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAGgtatgatttc ... cttcatgcagAATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
EST: gi|88226612|gb|CI226528.1|CI226528
EST:     GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAG                         AATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
genomic: GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAGgtatgatttc ... cttcatgcagAATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
EST: gi|88841022|gb|CI000984.1|CI000984
EST:     GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAG                         AATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
genomic: GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAGgtatgatttc ... cttcatgcagAATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
EST: gi|88693761|gb|CI735338.1|CI735338
EST:     GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAG                         AATCTGGTGATGCAAAATGTACATCATTCTGGGGGCGAGTTCATTGACCTT
genomic: GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAGgtatgatttc ... cttcatgcagAATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
EST: gi|88456284|gb|CI560887.1|CI560887
EST:     GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAG                         AATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
genomic: GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAGgtatgatttc ... cttcatgcagAATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
EST: gi|11026342|gb|AU162943.1|AU162943
EST:     CATGAAAGCTGTTATGAAGCTGCCACGTCTTCAG                         AATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
genomic: CATGAAAGCTGTTATGAAGCTGCCACGTCTTCAGgtatgatttc ... cttcatgcagAATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
EST: gi|86416061|gb|CI030072.1|CI030072
EST:     GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAG                         AATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
genomic: GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAGgtatgatttc ... cttcatgcagAATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
EST: gi|88216486|gb|CI216335.1|CI216335
EST:     GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAG                         AATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
genomic: GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAGgtatgatttc ... cttcatgcagAATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
EST: gi|88845676|gb|CI008673.1|CI008673
EST:     GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAG                         AATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
genomic: GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAGgtatgatttc ... cttcatgcagAATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
EST: gi|88958327|gb|CI095846.1|CI095846
EST:     GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAG                         AATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
genomic: GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAGgtatgatttc ... cttcatgcagAATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
EST: gi|88465087|gb|CI514859.1|CI514859
EST:     GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAG                         AATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
genomic: GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAGgtatgatttc ... cttcatgcagAATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
EST: gi|86433131|gb|CI093474.1|CI093474
EST:     GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAG                         AATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
genomic: GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAGgtatgatttc ... cttcatgcagAATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
EST: gi|88985455|gb|CI002972.1|CI002972
EST:     GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAG                         AATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
genomic: GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAGgtatgatttc ... cttcatgcagAATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
EST: gi|88374234|gb|CI513321.1|CI513321
EST:     GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAG                         AATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
genomic: GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAGgtatgatttc ... cttcatgcagAATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
EST: gi|88452610|gb|CI558271.1|CI558271
EST:     TGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAG                         AATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
genomic: TGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAGgtatgatttc ... cttcatgcagAATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
EST: gi|89183315|gb|CI045880.1|CI045880
EST:     GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAG                         AATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
genomic: GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAGgtatgatttc ... cttcatgcagAATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
EST: gi|86487600|gb|CI130233.1|CI130233
EST:     GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAG                         AATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
genomic: GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAGgtatgatttc ... cttcatgcagAATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
EST: gi|86860035|gb|CI321984.1|CI321984
EST:     GTGCGTCACGGGATAGCATGAAAGCTTTTATGAATCGGCCACCTCTTCAG                         AATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT
genomic: GTGCGTCACGGGATAGCATGAAAGCTGTTATGAAGCTGCCACGTCTTCAGgtatgatttc ... cttcatgcagAATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attcatcgtctattatgtttgatacatgaatctgattgctttattcttcatgcagAATCTGGTGATGCAAAATGTAGATCATTCTGGGGGCGAGTTCATTGACCTTTTGCAAGGTCTGTTAAGGTATGATCCAGCTAGCCGCCTAACAGCACAAG
                             atctgat  putative branch site (score: 4)
                                   ttgctttattcttc  CT-rich tract
          tattatgtttgata  TA-rich tract