1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...atccaagttaagtaaagaggacattgtactgctgtgtctaatgccttttgacaatgattacactgagattaatatcattttcttttcctctaaattaaagTATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGAGACTATTTCTGATTCCAATAAAAAGCTGGGAGGATCTGACAAGTGACAA
species | Oryza sativa |
transcript | LOC_Os12g26290.6 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAG TATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGAEST: gi|29674052|gb|CB670327.1|CB670327
genomic: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAGgtataattaa ... taaattaaagTATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGA
EST: TGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAG TATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGAEST: gi|29673790|gb|CB670065.1|CB670065
genomic: TGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAGgtataattaa ... taaattaaagTATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGA
EST: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAG TATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGAEST: gi|29665953|gb|CB662228.1|CB662228
genomic: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAGgtataattaa ... taaattaaagTATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGA
EST: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAG TATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGAEST: gi|29677262|gb|CB673537.1|CB673537
genomic: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAGgtataattaa ... taaattaaagTATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGA
EST: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAG TATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGAEST: gi|29626273|gb|CB631284.1|CB631284
genomic: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAGgtataattaa ... taaattaaagTATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGA
EST: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAG TATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGAEST: gi|25800115|gb|CA756076.1|CA756076
genomic: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAGgtataattaa ... taaattaaagTATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGA
EST: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAG TATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGAEST: gi|29622061|gb|CB627072.1|CB627072
genomic: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAGgtataattaa ... taaattaaagTATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGA
EST: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAG TATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGAEST: gi|29623849|gb|CB628860.1|CB628860
genomic: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAGgtataattaa ... taaattaaagTATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGA
EST: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAG TATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGAEST: gi|29626126|gb|CB631137.1|CB631137
genomic: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAGgtataattaa ... taaattaaagTATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGA
EST: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAG TATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGAEST: gi|29613621|gb|CB618634.1|CB618634
genomic: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAGgtataattaa ... taaattaaagTATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGA
EST: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAG TATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGAEST: gi|29625599|gb|CB630610.1|CB630610
genomic: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAGgtataattaa ... taaattaaagTATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGA
EST: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAG TATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGAEST: gi|29615924|gb|CB620936.1|CB620936
genomic: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAGgtataattaa ... taaattaaagTATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGA
EST: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAG TATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGAEST: gi|29679635|gb|CB675910.1|CB675910
genomic: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAGgtataattaa ... taaattaaagTATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGA
EST: ACCTTGCTGCCCTAGAAG TATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGAEST: gi|29622414|gb|CB627425.1|CB627425
genomic: ACCTTGCTGCCCTAGAAGgtataattaa ... taaattaaagTATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGA
EST: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAG TATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGAEST: gi|29613585|gb|CB618598.1|CB618598
genomic: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAGgtataattaa ... taaattaaagTATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGA
EST: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAG TATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGAEST: gi|29617673|gb|CB622685.1|CB622685
genomic: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAGgtataattaa ... taaattaaagTATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGA
EST: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAG TATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGAEST: gi|29628686|gb|CB633697.1|CB633697
genomic: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAGgtataattaa ... taaattaaagTATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGA
EST: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAG TATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGAEST: gi|29625533|gb|CB630544.1|CB630544
genomic: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAGgtataattaa ... taaattaaagTATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGA
EST: AATCGACCTTGCTGCCCTAGAAG TATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGAEST: gi|29629208|gb|CB634219.1|CB634219
genomic: AATCGACCTTGCTGCCCTAGAAGgtataattaa ... taaattaaagTATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGA
EST: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAG TATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGAEST: gi|33675490|gb|CF303729.1|CF303729
genomic: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAGgtataattaa ... taaattaaagTATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGA
EST: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAG TATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGAEST: gi|29625520|gb|CB630531.1|CB630531
genomic: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAGgtataattaa ... taaattaaagTATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGA
EST: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAG TATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGAEST: gi|29626851|gb|CB631862.1|CB631862
genomic: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAGgtataattaa ... taaattaaagTATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGA
EST: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAG TATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGAEST: gi|29615979|gb|CB620991.1|CB620991
genomic: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAGgtataattaa ... taaattaaagTATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGA
EST: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAG TATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGAEST: gi|29625912|gb|CB630923.1|CB630923
genomic: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAGgtataattaa ... taaattaaagTATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGA
EST: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAG TATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGAEST: gi|29627805|gb|CB632816.1|CB632816
genomic: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAGgtataattaa ... taaattaaagTATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGA
EST: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAG TATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGAEST: gi|29625916|gb|CB630927.1|CB630927
genomic: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAGgtataattaa ... taaattaaagTATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGA
EST: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAG TATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGAEST: gi|29626294|gb|CB631305.1|CB631305
genomic: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAGgtataattaa ... taaattaaagTATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGA
EST: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAG TATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGAEST: gi|29623659|gb|CB628670.1|CB628670
genomic: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAGgtataattaa ... taaattaaagTATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGA
EST: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAG TATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGAEST: gi|29665952|gb|CB662227.1|CB662227
genomic: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAGgtataattaa ... taaattaaagTATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGA
EST: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAG TATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGAEST: gi|29625788|gb|CB630799.1|CB630799
genomic: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAGgtataattaa ... taaattaaagTATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGA
EST: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAG TATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGAEST: gi|29613657|gb|CB618670.1|CB618670
genomic: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAGgtataattaa ... taaattaaagTATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGA
EST: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAG TATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGAEST: gi|29625831|gb|CB630842.1|CB630842
genomic: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAGgtataattaa ... taaattaaagTATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGA
EST: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAG TATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGAEST: gi|29624044|gb|CB629055.1|CB629055
genomic: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAGgtataattaa ... taaattaaagTATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGA
EST: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAG TATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGAEST: gi|29627803|gb|CB632814.1|CB632814
genomic: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAGgtataattaa ... taaattaaagTATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGA
EST: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAG TATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGAEST: gi|29622491|gb|CB627502.1|CB627502
genomic: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAGgtataattaa ... taaattaaagTATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGA
EST: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAG TATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGAEST: gi|29623095|gb|CB628106.1|CB628106
genomic: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAGgtataattaa ... taaattaaagTATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGA
EST: AATCGACCTTGCT-CATCTAAAAG TATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGEST: gi|29622940|gb|CB627951.1|CB627951
genomic: AATCGACCTTGCTGC-CCTAGAAGgtataattaa ... taaattaaagTATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGG
EST: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAG TATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGAEST: gi|29623590|gb|CB628601.1|CB628601
genomic: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAGgtataattaa ... taaattaaagTATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGA
EST: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAG TATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGA
genomic: TTTGGATGGTACCAATCGATCTGACAGAATCGACCTTGCTGCCCTAGAAGgtataattaa ... taaattaaagTATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGA
ttttgacaatgattacactgagattaatatcattttcttttcctctaaattaaagTATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGAGACTATTTCTGATTCCAATAAAAAGCTGGGAGGATCTGACAAGTGACAA
ctctaaa putative branch site (score: 3)
tatcattttcttttcc CT-rich tract
agattaatatcatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atccaagttaagtaaagaggacattgtactgctgtgtctaatgccttttgacaatgattacactgagattaatatcattttcttttcctctaaattaaagTATACCGAGACAGGGAGAGAAGTGTACCAAGGTACAATGAGTTCAGGAGGAGACTATTTCTGATTCCAATAAAAAGCTGGGAGGATCTGACAAGTGACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT