1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaaataaagataatactggagaccctttcaattttcggacagtgaacagtacaactataaaagtgctctgcagaatgaatctaggagcaaaatctaacaagaaccttttgcagGCATTGACCAGCCAGGCAATGAGACCCTACCTGGTGCACTGTATGACTTCTTCAGGATACAATATTTTGATCAGTACCTCCATGAGCTTAAGAGGGCGAT
species | Oryza sativa |
transcript | LOC_Os12g23170.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GCATGTCAAGGAGAAGTACAAGGACCCCATTATAATCATCGGAGAAAATG GCATTGACCAGCCAGGCAATGAGACCCTACCTGGTGCACTGTATGACTTCTEST: gi|86504427|gb|CI147060.1|CI147060
genomic: GCATGTCAAGGAGAAGTACAAGGACCCCATTATAATCATCGGAGAAAATGgtaaataaag ... ccttttgcagGCATTGACCAGCCAGGCAATGAGACCCTACCTGGTGCACTGTATGACTTCT
EST: GCATGTCAAGGAGAAGTACAAGGACCCCATTATAATCATCGGAGAAAATG GCATTGACCAGCCAGGCAATGAGACCCTACCTGGTGCACTGTATGACTTCTEST: gi|87007240|gb|CI277315.1|CI277315
genomic: GCATGTCAAGGAGAAGTACAAGGACCCCATTATAATCATCGGAGAAAATGgtaaataaag ... ccttttgcagGCATTGACCAGCCAGGCAATGAGACCCTACCTGGTGCACTGTATGACTTCT
EST: GCATGTCAAGGAGAAGTACAAGGACCCCATTATAATCATCGGAGAAAATG GCATTGACCAGCCAGGCAATGAGACCCTACCTGGTGCACTGTATGACTTCT
genomic: GCATGTCAAGGAGAAGTACAAGGACCCCATTATAATCATCGGAGAAAATGgtaaataaag ... ccttttgcagGCATTGACCAGCCAGGCAATGAGACCCTACCTGGTGCACTGTATGACTTCT
aaaagtgctctgcagaatgaatctaggagcaaaatctaacaagaaccttttgcagGCATTGACCAGCCAGGCAATGAGACCCTACCTGGTGCACTGTATGACTTCTTCAGGATACAATATTTTGATCAGTACCTCCATGAGCTTAAGAGGGCGAT
atctaac putative branch site (score: 29)
ccttttgc putative PPT
aaaatctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaataaagataatactggagaccctttcaattttcggacagtgaacagtacaactataaaagtgctctgcagaatgaatctaggagcaaaatctaacaagaaccttttgcagGCATTGACCAGCCAGGCAATGAGACCCTACCTGGTGCACTGTATGACTTCTTCAGGATACAATATTTTGATCAGTACCTCCATGAGCTTAAGAGGGCGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG