1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...catccacgttgagcataaattaacatcattacccattccagactgccagtgtttaactgtattattagcaatgatcataatatgaatgcatattttgcagACCGAGGGGAAAATCCTGGATTTCAACGAATGTGCCACACCTATAAGATCATCAGATAAAAAAGCTGGCAGCAGTCTGGGAAGATCTTTGAGCTCCCCTA
species | Oryza sativa |
transcript | LOC_Os12g13570.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ATGCCAAGAAGGAACCAGGAGCAACAACCAAATTGCAAGCAAAAATCAAG ACCGAGGGGAAAATCCTGGATTTCAACGAATGTGCCACACCTATAAGATCAEST: gi|27546629|gb|CA764708.2|CA764708
genomic: ATGCCAAGAAGGAACCAGGAGCAACAACCAAATTGCAAGCAAAAATCAAGgtgcgtattg ... tattttgcagACCGAGGGGAAAATCCTGGATTTCAACGAATGTGCCACACCTATAAGATCA
EST: ATGCCAAGAAGGAACCAGGAGCAACAACCAAATTGCAAGCAAAAATCAAG ACCGAGGGGAAAATCCTGGATTTCAACGAATGTGCCACACCTATAAGATCAEST: gi|25804428|gb|CA760389.1|CA760389
genomic: ATGCCAAGAAGGAACCAGGAGCAACAACCAAATTGCAAGCAAAAATCAAGgtgcgtattg ... tattttgcagACCGAGGGGAAAATCCTGGATTTCAACGAATGTGCCACACCTATAAGATCA
EST: ATGCCAAGAAGGAACCAGGAGCAACAACCAAATTGCAAGCAAAAATCAAG ACCGAGGGGAAAATCCTGGATTTCAACGAATGTGCCACACCTATAAGATCA
genomic: ATGCCAAGAAGGAACCAGGAGCAACAACCAAATTGCAAGCAAAAATCAAGgtgcgtattg ... tattttgcagACCGAGGGGAAAATCCTGGATTTCAACGAATGTGCCACACCTATAAGATCA
ccagtgtttaactgtattattagcaatgatcataatatgaatgcatattttgcagACCGAGGGGAAAATCCTGGATTTCAACGAATGTGCCACACCTATAAGATCATCAGATAAAAAAGCTGGCAGCAGTCTGGGAAGATCTTTGAGCTCCCCTA
gtttaac putative branch site (score: 3)
tttaactgtattatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catccacgttgagcataaattaacatcattacccattccagactgccagtgtttaactgtattattagcaatgatcataatatgaatgcatattttgcagACCGAGGGGAAAATCCTGGATTTCAACGAATGTGCCACACCTATAAGATCATCAGATAAAAAAGCTGGCAGCAGTCTGGGAAGATCTTTGAGCTCCCCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
catccac
- - - - - -agcataa
- - - - - - - - - - -aacatca
- - - - - - - - - - - - - - - - ccattcc
- - - - - - - - - - - - - - - - - - - - - ctgccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaatgc