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gtaacgagttgcaaagcactatgtgtatgtttttttgtaaaatctctgatacgtaatgtaatgaagagcatttcatttctctggtattgggcagTTGGCAGATGGCAATTTGGAACCAAAAAAGGAAGTCGCTACTAGGCTTGTAAGATTGGAGAAGAAATTGTTGCATGGTTGTCTCCAGGCTGCTAATGAGT
species | Oryza sativa |
transcript | LOC_Os12g13460.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GGATGATGCTATG TT-GCAGATGGCAATTTGGAACCAAAAAAGGAAGTCGCTACTAGGCTTGTAEST: gi|86899985|gb|CI300097.1|CI300097
genomic: GGATGATGCTATGgtaacgagtt ... tattgggcagTTGGCAGATGGCAATTTGGAACCAAAAAAGGAAGTCGCTACTAGGCTTGTA
EST: AGTCACGATTGGCTGATTATCCAACAACTTTGGATGAGGATGATGCTATG TTGGCAGATGGCAATTTGGAACCAAAAAAGGAAGTCGCTACTAGGCEST: gi|218503364|gb|FG964057.1|FG964057
genomic: AGTCACGATTGGCTGATTATCCAACAACTTTGGATGAGGATGATGCTATGgtaacgagtt ... tattgggcagTTGGCAGATGGCAATTTGGAACCAAAAAAGGAAGTCGCTACTAGGC
EST: AGTCACGATTGGCTGATTATCCAACAACTTTGGATGAGGATGATGCTATG TTGGCAGATGGCEST: gi|88998204|gb|CI038089.1|CI038089
genomic: AGTCACGATTGGCTGATTATCCAACAACTTTGGATGAGGATGATGCTATGgtaacgagtt ... tattgggcagTTGGCAGATGGC
EST: AGTCACGATTGGCTGATTATCCAACAACTTTGGATGAGGATGATGCTATG TTGGCAGATGGCAATTTGGAACCAAAAAAGGAAGTCGCTACTAGGCTTGTAEST: gi|58585967|gb|CF984275.1|CF984275
genomic: AGTCACGATTGGCTGATTATCCAACAACTTTGGATGAGGATGATGCTATGgtaacgagtt ... tattgggcagTTGGCAGATGGCAATTTGGAACCAAAAAAGGAAGTCGCTACTAGGCTTGTA
EST: AGTCACGATTGGCTGATTATCCAACAACTTTGGATGAGGATGATGCTATG TTGGCAGATGGCAATTTGGAACCAAAAAAGGAAGTCGCTACTAGGCTTGTAEST: gi|428273|gb|D24421.1|D24421
genomic: AGTCACGATTGGCTGATTATCCAACAACTTTGGATGAGGATGATGCTATGgtaacgagtt ... tattgggcagTTGGCAGATGGCAATTTGGAACCAAAAAAGGAAGTCGCTACTAGGCTTGTA
EST: AGTCACGATTGGCTGATTATCCAACAACTTTGGATGAGGATGATGCTATG TTGGCAGATGGCAATTTGGAACCAAAAAAGGAAGTCGCTACTAGGCTTGTAEST: gi|428650|gb|D24802.1|D24802
genomic: AGTCACGATTGGCTGATTATCCAACAACTTTGGATGAGGATGATGCTATGgtaacgagtt ... tattgggcagTTGGCAGATGGCAATTTGGAACCAAAAAAGGAAGTCGCTACTAGGCTTGTA
EST: AGTCACGATTGGCTGATTATCCAACAACTTTGGATGAGGATGATGCTATG TTGGCAGATGGCAATTTGGNNCCAAAAAAGGAAGTCGEST: gi|29657715|gb|CB653990.1|CB653990
genomic: AGTCACGATTGGCTGATTATCCAACAACTTTGGATGAGGATGATGCTATGgtaacgagtt ... tattgggcagTTGGCAGATGGCAATTTGGAACCAAAAAAGGAAGTCG
EST: AGTCACGATTGGCTGATTATCCAACAACTTTGGATGAGGATGATGCTATG TTGGCAGATGGCAATTTGGAACCAAAAAAGGAAGTCGCTACTAGGCTTGTA
genomic: AGTCACGATTGGCTGATTATCCAACAACTTTGGATGAGGATGATGCTATGgtaacgagtt ... tattgggcagTTGGCAGATGGCAATTTGGAACCAAAAAAGGAAGTCGCTACTAGGCTTGTA
aaatctctgatacgtaatgtaatgaagagcatttcatttctctggtattgggcagTTGGCAGATGGCAATTTGGAACCAAAAAAGGAAGTCGCTACTAGGCTTGTAAGATTGGAGAAGAAATTGTTGCATGGTTGTCTCCAGGCTGCTAATGAGT
ctctgat putative branch site (score: 29)
taatgtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacgagttgcaaagcactatgtgtatgtttttttgtaaaatctctgatacgtaatgtaatgaagagcatttcatttctctggtattgggcagTTGGCAGATGGCAATTTGGAACCAAAAAAGGAAGTCGCTACTAGGCTTGTAAGATTGGAGAAGAAATTGTTGCATGGTTGTCTCCAGGCTGCTAATGAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT