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...gtgtcaagatgctcatgctctttctcaagttttcctaacacatgagcatattattcagaggggaaaaaaatctgtgtggactaacttttcctattttcagCCATGCCCTGCTTCTTCCCTATGCAGCCCCTCATGCAGATGCAATCGTCAAGAAGCAAACGTGTGCTTTTTATGTGAGGTCAAGCAAGATAATTTTTCGA
species | Oryza sativa |
transcript | LOC_Os12g13130.4 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ACGAATTTCGAAAGTTGTCCAAAAGAAAAAACCATCTTAGGTACCTAATT CCATGCCCTGCTTCTTCCCTATGCAGCCEST: gi|86841250|gb|CI342973.1|CI342973
genomic: ACGAATTTCGAAAGTTGTCCAAAAGAAAAAACCATCTTAGGTACCTAATTgtaagttgcc ... ctattttcagCCATGCCCTGCTTCTTCCCTATGCAGCC
EST: ACGAATTTCGAAAGTTGTCCAAAAGAAAAAACCATCTTAGGTACCTAATT CCATGCCCTGCTTCTTCCCTATGCAGCCCCTCATGCAGATGCAATCGTCAAEST: gi|88222581|gb|CI222537.1|CI222537
genomic: ACGAATTTCGAAAGTTGTCCAAAAGAAAAAACCATCTTAGGTACCTAATTgtaagttgcc ... ctattttcagCCATGCCCTGCTTCTTCCCTATGCAGCCCCTCATGCAGATGCAATCGTCAA
EST: ACGAATTTCGAAAGTTGTCCAAAAGAAAAAACCATCTTAGGTACCTAATT CCATGCCCTGCTTCTTCCCTATGCAGCCCCTCATGCAGATGCAATCGTCAAEST: gi|88849353|gb|CI087875.1|CI087875
genomic: ACGAATTTCGAAAGTTGTCCAAAAGAAAAAACCATCTTAGGTACCTAATTgtaagttgcc ... ctattttcagCCATGCCCTGCTTCTTCCCTATGCAGCCCCTCATGCAGATGCAATCGTCAA
EST: ACGAATTTCGAAAGTTGTCCAAAAGAAAAAACCATCTTAGGTACCTAATT CCATGCCCTGCTTCTTCCCTATGCAGCCCCTCATGCAGATGCAATCGTCAAEST: gi|88382508|gb|CI535716.1|CI535716
genomic: ACGAATTTCGAAAGTTGTCCAAAAGAAAAAACCATCTTAGGTACCTAATTgtaagttgcc ... ctattttcagCCATGCCCTGCTTCTTCCCTATGCAGCCCCTCATGCAGATGCAATCGTCAA
EST: ACGAATTTCGAAAGTTGTCCAAAAGAAAAAACCATCTTAGGTACCTAATT CCATGCCCTGCTTCTTCCCTATGCAGCCCCTCATGCAGATGCAATCGTCAAEST: gi|88482726|gb|CI419997.1|CI419997
genomic: ACGAATTTCGAAAGTTGTCCAAAAGAAAAAACCATCTTAGGTACCTAATTgtaagttgcc ... ctattttcagCCATGCCCTGCTTCTTCCCTATGCAGCCCCTCATGCAGATGCAATCGTCAA
EST: ACGAATTTCGAAAGTTGTCCAAAAGAAAAAACCATCTTAGGTACCTAATT CCATGCCCTGCTTCTTCCCTATGCAGCCCCTCATGCAGATGCAATCGTCAAEST: gi|88304334|gb|CI515607.1|CI515607
genomic: ACGAATTTCGAAAGTTGTCCAAAAGAAAAAACCATCTTAGGTACCTAATTgtaagttgcc ... ctattttcagCCATGCCCTGCTTCTTCCCTATGCAGCCCCTCATGCAGATGCAATCGTCAA
EST: ACGAATTTCGAAAGTTGTCCAAAAGAAAAAACCATCTTAGGTACCTAATT CCATGCCCTGCTTCTTCCCTATGCAGCCCCTCATGCAGATGCAATCGTCAAEST: gi|88688437|gb|CI732013.1|CI732013
genomic: ACGAATTTCGAAAGTTGTCCAAAAGAAAAAACCATCTTAGGTACCTAATTgtaagttgcc ... ctattttcagCCATGCCCTGCTTCTTCCCTATGCAGCCCCTCATGCAGATGCAATCGTCAA
EST: ACGAATTTCGAAAGTTGTCCAAAAGAAAAAACCATCTTAGGTACCTAATT CCATGCCCTGCTTCTTCCCTATGCAGCCCCTCATGCAGATGEST: gi|29645805|gb|CB650812.1|CB650812
genomic: ACGAATTTCGAAAGTTGTCCAAAAGAAAAAACCATCTTAGGTACCTAATTgtaagttgcc ... ctattttcagCCATGCCCTGCTTCTTCCCTATGCAGCCCCTCATGCAGATG
EST: ACGAATTTCGAAAGTTGTCCAAAAGAAAAAACCATCTTAGGTACCTAATT CCATGCCCTGCTTTTTCCCTATGCAGCCCCTCATGCAGATGCAATCGTCAAEST: gi|88374442|gb|CI515926.1|CI515926
genomic: ACGAATTTCGAAAGTTGTCCAAAAGAAAAAACCATCTTAGGTACCTAATTgtaagttgcc ... ctattttcagCCATGCCCTGCTTCTTCCCTATGCAGCCCCTCATGCAGATGCAATCGTCAA
EST: ACGAATTTCGAAAGTTGTCCAAAAGAAAAAACCATCTTAGGTACCTAATT CCATGCCCTGCTTCTTCCCTATGCAGCCCCTCATGCAGATGCAATCGTCAAEST: gi|29645769|gb|CB650776.1|CB650776
genomic: ACGAATTTCGAAAGTTGTCCAAAAGAAAAAACCATCTTAGGTACCTAATTgtaagttgcc ... ctattttcagCCATGCCCTGCTTCTTCCCTATGCAGCCCCTCATGCAGATGCAATCGTCAA
EST: ACGAATTTCGAAAGTTGTCCAAAAGAAAAAACCATCTTAGGTACCTAATT CCATGCCCTGCTTCTTCCCTATGCAGCCCCTCATGCAGATGCAATCGTCAAEST: gi|88260579|gb|CI362872.1|CI362872
genomic: ACGAATTTCGAAAGTTGTCCAAAAGAAAAAACCATCTTAGGTACCTAATTgtaagttgcc ... ctattttcagCCATGCCCTGCTTCTTCCCTATGCAGCCCCTCATGCAGATGCAATCGTCAA
EST: ACGAATTTCGAAAGTTGTCCAAAAGAAAAAACCATCTTAGGTACCTAATT CCATGCCCTGCTTCTTCCCTATGCAGCCCCTCATGCAGATGCAATCGTCAAEST: gi|88303968|gb|CI513042.1|CI513042
genomic: ACGAATTTCGAAAGTTGTCCAAAAGAAAAAACCATCTTAGGTACCTAATTgtaagttgcc ... ctattttcagCCATGCCCTGCTTCTTCCCTATGCAGCCCCTCATGCAGATGCAATCGTCAA
EST: ACGAATTTCGAAAGTTGTCCAAAAGAAAAAACCATCTTAGGTACCTAATT CCATGCCCTGCTTCTTCCCTATGCAGCCCCTCATGCAGATGCAATCGTCAA
genomic: ACGAATTTCGAAAGTTGTCCAAAAGAAAAAACCATCTTAGGTACCTAATTgtaagttgcc ... ctattttcagCCATGCCCTGCTTCTTCCCTATGCAGCCCCTCATGCAGATGCAATCGTCAA
gcatattattcagaggggaaaaaaatctgtgtggactaacttttcctattttcagCCATGCCCTGCTTCTTCCCTATGCAGCCCCTCATGCAGATGCAATCGTCAAGAAGCAAACGTGTGCTTTTTATGTGAGGTCAAGCAAGATAATTTTTCGA
gactaac putative branch site (score: 1)
cttttcctattttc CT-rich tract
aaaaaaatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtcaagatgctcatgctctttctcaagttttcctaacacatgagcatattattcagaggggaaaaaaatctgtgtggactaacttttcctattttcagCCATGCCCTGCTTCTTCCCTATGCAGCCCCTCATGCAGATGCAATCGTCAAGAAGCAAACGTGTGCTTTTTATGTGAGGTCAAGCAAGATAATTTTTCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - agatgct
- - - - - - -catgctc
- - - - - - - - - - - - - - - - - - - - catgagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgtgtg