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...tccaatacaattactgtagcaacttccataggacgtcttgtatgtatatgctactagtgtttggttagttactgactttctaattctgcttatgtaacagGTGACTTTGTTTTGGTCATGTCTCCTTTTATATGGCGCCGTCAAGCTCTTCCTATGGACTCAACTCCTGTCGACATGGAAAGGAGTCGGGTTTACGGGCC
species | Oryza sativa |
transcript | LOC_Os11g41900.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CTTTTGATGAGGAGATTAGACCAATTGGCCGCCCAGTAAAATCATTGCTG GTGACTTTGTTTTGGTCATGTCTCCTTTTATATGGCGCCGTCAAGCTCTTCEST: gi|86435824|gb|CI107057.1|CI107057
genomic: CTTTTGATGAGGAGATTAGACCAATTGGCCGCCCAGTAAAATCATTGCTGgtaaaatctc ... tatgtaacagGTGACTTTGTTTTGGTCATGTCTCCTTTTATATGGCGCCGTCAAGCTCTTC
EST: CGCCCAGTAAAATCATTGCTG GTGACTTTGTTTTGGTCATGTCTCCTTTTATATGGCGCCGTCAAGCTCTTCEST: gi|29639123|gb|CB644132.1|CB644132
genomic: CGCCCAGTAAAATCATTGCTGgtaaaatctc ... tatgtaacagGTGACTTTGTTTTGGTCATGTCTCCTTTTATATGGCGCCGTCAAGCTCTTC
EST: CTTTTGATGAGGAGATTAGACCAATTGGCCGCCCAGTAAAATCATTGCTG GTGACTTTGTTTTGGTCATGTCTCCTTTTATATGGCGCCGTCAAGCTCTTCEST: gi|29615790|gb|CB620802.1|CB620802
genomic: CTTTTGATGAGGAGATTAGACCAATTGGCCGCCCAGTAAAATCATTGCTGgtaaaatctc ... tatgtaacagGTGACTTTGTTTTGGTCATGTCTCCTTTTATATGGCGCCGTCAAGCTCTTC
EST: CTTTTGATGAGGAGATTAGACCAATTGGCCGCCCAGTAAAATCATTGCTG GTGACTTTGTTTTGGTCATGTCTCCTTTTATATGGCGCCGTCAAGCTCTTCEST: gi|117217204|gb|CT845404.1|CT845404
genomic: CTTTTGATGAGGAGATTAGACCAATTGGCCGCCCAGTAAAATCATTGCTGgtaaaatctc ... tatgtaacagGTGACTTTGTTTTGGTCATGTCTCCTTTTATATGGCGCCGTCAAGCTCTTC
EST: CTTTTGATGAGGAGATTAGACCAATTGGCCGCCCAGTAAAATCATTGCTG GTGACTTTGTTTTGGTCATGTCTCCTTTTATATGGCGCCGTCAAGCTCTTCEST: gi|86494086|gb|CI136719.1|CI136719
genomic: CTTTTGATGAGGAGATTAGACCAATTGGCCGCCCAGTAAAATCATTGCTGgtaaaatctc ... tatgtaacagGTGACTTTGTTTTGGTCATGTCTCCTTTTATATGGCGCCGTCAAGCTCTTC
EST: CTTTTGATGAGGAGATTAGACCAATTGGCCGCCCAGTAAAATCATTGCTG GTGACTTTGTTTTGGTCATGTCTCCTTTTATATGGCGCCGTCAAGCTCTTCEST: gi|86512250|gb|CI154883.1|CI154883
genomic: CTTTTGATGAGGAGATTAGACCAATTGGCCGCCCAGTAAAATCATTGCTGgtaaaatctc ... tatgtaacagGTGACTTTGTTTTGGTCATGTCTCCTTTTATATGGCGCCGTCAAGCTCTTC
EST: AGGAGATTAGACCAATTGNCCGCCCAGTAAAATCATTGCTG GTGACTTTGTTTTGGTCATGTCTCCTTTTATATGGCGCCGTCAAGCTCTTCEST: gi|29639077|gb|CB644086.1|CB644086
genomic: AGGAGATTAGACCAATTGGCCGCCCAGTAAAATCATTGCTGgtaaaatctc ... tatgtaacagGTGACTTTGTTTTGGTCATGTCTCCTTTTATATGGCGCCGTCAAGCTCTTC
EST: CTTTTGATGAGGAGATTAGACCAATTGGCCGCCCAGTAAAATCATTGCTG GTGACTTTGTTTTGGTCATGTCTCCTTTTATATGGCGCCGTCAAGCTCTTCEST: gi|88967516|gb|CI002607.1|CI002607
genomic: CTTTTGATGAGGAGATTAGACCAATTGGCCGCCCAGTAAAATCATTGCTGgtaaaatctc ... tatgtaacagGTGACTTTGTTTTGGTCATGTCTCCTTTTATATGGCGCCGTCAAGCTCTTC
EST: CTTTTGATGAGGAGATTAGACCAATTGGCCGCCCAGTAAAATCATTGCTG GTGACTTTGTTTTGGTCATGTCTCCTTTTATATGGCGCCGTCAAGCTCTTCEST: gi|112785295|gb|EE590405.1|EE590405
genomic: CTTTTGATGAGGAGATTAGACCAATTGGCCGCCCAGTAAAATCATTGCTGgtaaaatctc ... tatgtaacagGTGACTTTGTTTTGGTCATGTCTCCTTTTATATGGCGCCGTCAAGCTCTTC
EST: CTTTTGATGAGGAGATTAGACCAATTGGCCGCCCAGTAAAATCATTGCTG GTGACTTTGTTTTGGTCATGTCTCCTTTTATATGGCGCCGTCAAGCTCTTCEST: gi|86594010|gb|CI260239.1|CI260239
genomic: CTTTTGATGAGGAGATTAGACCAATTGGCCGCCCAGTAAAATCATTGCTGgtaaaatctc ... tatgtaacagGTGACTTTGTTTTGGTCATGTCTCCTTTTATATGGCGCCGTCAAGCTCTTC
EST: CTTTTGATGAGGAGATTAGACCAATTGGCCGCCCAGTAAAATCATTGCTG GTGACTTTGTTTTGGTCATGTCTCCTTTTATATGGCGCCGTCAAGCTCTTCEST: gi|86828111|gb|CI274978.1|CI274978
genomic: CTTTTGATGAGGAGATTAGACCAATTGGCCGCCCAGTAAAATCATTGCTGgtaaaatctc ... tatgtaacagGTGACTTTGTTTTGGTCATGTCTCCTTTTATATGGCGCCGTCAAGCTCTTC
EST: CTTTTGATGAGGAGATTAGACCAATTGGCCGCCCAGTAAAATCATTGCTG GTGACTTTGTTTTGGTCATGTCTCCTTTTATATGGCGCCGTCAAGCTCTTCEST: gi|86434685|gb|CI105918.1|CI105918
genomic: CTTTTGATGAGGAGATTAGACCAATTGGCCGCCCAGTAAAATCATTGCTGgtaaaatctc ... tatgtaacagGTGACTTTGTTTTGGTCATGTCTCCTTTTATATGGCGCCGTCAAGCTCTTC
EST: CCAATTGGCCGCCCAGTAAAATCATTGCTG GTGACTTTGTTTTGGTCATGTCTCCTTTTATATGGCGCCGTCAAGCTCTTC
genomic: CCAATTGGCCGCCCAGTAAAATCATTGCTGgtaaaatctc ... tatgtaacagGTGACTTTGTTTTGGTCATGTCTCCTTTTATATGGCGCCGTCAAGCTCTTC
atatgctactagtgtttggttagttactgactttctaattctgcttatgtaacagGTGACTTTGTTTTGGTCATGTCTCCTTTTATATGGCGCCGTCAAGCTCTTCCTATGGACTCAACTCCTGTCGACATGGAAAGGAGTCGGGTTTACGGGCC
ttctgctt CT-rich tract
tttctaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccaatacaattactgtagcaacttccataggacgtcttgtatgtatatgctactagtgtttggttagttactgactttctaattctgcttatgtaacagGTGACTTTGTTTTGGTCATGTCTCCTTTTATATGGCGCCGTCAAGCTCTTCCTATGGACTCAACTCCTGTCGACATGGAAAGGAGTCGGGTTTACGGGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- caatacaa
- - - - - - -ctgtagc
- - - - - - - - - - - - - - - - - - -ttgtatg
- - - - - - - - - - - - - - - - - - - - - - - - tgctact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttactga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctgct