1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtcagcactaaatgatattaatttcttctgtggtacatttgcactaaagttgatgcacagttattacatggtatgtttcttaatgcagAGAGACCCAGCACACTTATTCATTGTCCAATGAGAATGTTAATCATAGGGAGAAAGATGCTCTTGACAGTGACTCGCAACGATACACAACAGCTTCTACC
species | Oryza sativa |
transcript | LOC_Os11g36070.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CACAATATTCCAAATGAACATCCTGCTACATTGCCACCTCGAGATTCAAG AGAGACCCAGCACACTTATTCATTGTCCAATGAGAATGTTAATCATAGGGAEST: gi|66923674|gb|CX110522.1|CX110522
genomic: CACAATATTCCAAATGAACATCCTGCTACATTGCCACCTCGAGATTCAAGgtcagcacta ... cttaatgcagAGAGACCCAGCACACTTATTCATTGTCCAATGAGAATGTTAATCATAGGGA
EST: CACAATATTCCAAATGAACATCCTGCTACATTGCCACCTCGAGATTCAAG AGAGACCCAGCACACTTATTCATTGTCCAATGAGAATGTTAATCATAGGGAEST: gi|24468830|gb|CA305779.1|CA305779
genomic: CACAATATTCCAAATGAACATCCTGCTACATTGCCACCTCGAGATTCAAGgtcagcacta ... cttaatgcagAGAGACCCAGCACACTTATTCATTGTCCAATGAGAATGTTAATCATAGGGA
EST: CACAATATTCCAAATGAACATCCTGCTACATTGCCACCTCGAGATTCAAG AGAGACCCAGCACACTTATTCATTGTCCAATGAGAATGTTAATCATAGGGAEST: gi|29626154|gb|CB631165.1|CB631165
genomic: CACAATATTCCAAATGAACATCCTGCTACATTGCCACCTCGAGATTCAAGgtcagcacta ... cttaatgcagAGAGACCCAGCACACTTATTCATTGTCCAATGAGAATGTTAATCATAGGGA
EST: CACAATATTCCAAATGAACATCCTGCTACATTGCCACCTCGAGATTCAAG AGAGACCCAGCACACTTATTCATTGTCCAATGAGAATGTTAATCATAGGGAEST: gi|86503375|gb|CI146008.1|CI146008
genomic: CACAATATTCCAAATGAACATCCTGCTACATTGCCACCTCGAGATTCAAGgtcagcacta ... cttaatgcagAGAGACCCAGCACACTTATTCATTGTCCAATGAGAATGTTAATCATAGGGA
EST: CACAATATTCCAAATGAACATCCTGCTACATTGCCACCTCGAGATTCAAG AGAGACCCAGCACACTTATTCATTGTCCAATGAGAATGTTAATCATAGGGAEST: gi|29614178|gb|CB619191.1|CB619191
genomic: CACAATATTCCAAATGAACATCCTGCTACATTGCCACCTCGAGATTCAAGgtcagcacta ... cttaatgcagAGAGACCCAGCACACTTATTCATTGTCCAATGAGAATGTTAATCATAGGGA
EST: TATTCCAAATGAACATCCTGCTACATTGCCACCTCGAGATTCAAG AGAGACCCAGCACACTTATTCATTGTCCAATGAGAATGTTAATCATAGGGAEST: gi|29688058|gb|CB684333.1|CB684333
genomic: TATTCCAAATGAACATCCTGCTACATTGCCACCTCGAGATTCAAGgtcagcacta ... cttaatgcagAGAGACCCAGCACACTTATTCATTGTCCAATGAGAATGTTAATCATAGGGA
EST: TATTCCAAATGAACATCCTGCTACATTGCCACCTCGAGATTCAAG AGAGACCCAGCACACTTATTCATTGTCCAATGAGAATGTTAATCATAGGGAEST: gi|3759781|gb|C97039.1|C97039
genomic: TATTCCAAATGAACATCCTGCTACATTGCCACCTCGAGATTCAAGgtcagcacta ... cttaatgcagAGAGACCCAGCACACTTATTCATTGTCCAATGAGAATGTTAATCATAGGGA
EST: TATTCCAAATGAACNTCCTGCTACATTGCCACCTCGAGATTCAAG AGAGTCCCAGCACANTTATTCATTGTCCAATGAGAATGTTAATCATAGGGA
genomic: TATTCCAAATGAACATCCTGCTACATTGCCACCTCGAGATTCAAGgtcagcacta ... cttaatgcagAGAGACCCAGCACACTTATTCATTGTCCAATGAGAATGTTAATCATAGGGA
tacatttgcactaaagttgatgcacagttattacatggtatgtttcttaatgcagAGAGACCCAGCACACTTATTCATTGTCCAATGAGAATGTTAATCATAGGGAGAAAGATGCTCTTGACAGTGACTCGCAACGATACACAACAGCTTCTACC
tgtttctt CT-rich tract
ttattacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagcactaaatgatattaatttcttctgtggtacatttgcactaaagttgatgcacagttattacatggtatgtttcttaatgcagAGAGACCCAGCACACTTATTCATTGTCCAATGAGAATGTTAATCATAGGGAGAAAGATGCTCTTGACAGTGACTCGCAACGATACACAACAGCTTCTACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG