1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...aagctcatgcttatacaaaaaattgatcacgatctgttgccagttctgcataaatttttattttgtctactcttgaaatcttacataatctcatttccagGCTGTACTGTTACTGGAAAAGATCTCTAGCAACGTGGTCGGGGATCCAATTGAAATAGAAAGGCTGCATGATGCTGTTGATTGCCTCCTATCTTTCGTG
species | Oryza sativa |
transcript | LOC_Os11g35710.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CAGCAGACAATGGATGGGCTGTGTCTGACACTACAGCAGAAGCGCTGAAG GCTGTACTGTTACTGGAAAAGATCTCTAGCAACGTGGTCGGGGATCCAATTEST: gi|163918585|gb|EG711635.1|EG711635
genomic: CAGCAGACAATGGATGGGCTGTGTCTGACACTACAGCAGAAGCGCTGAAGgtcattatgt ... tcatttccagGCTGTACTGTTACTGGAAAAGATCTCTAGCAACGTGGTCGGGGATCCAATT
EST: CAGCAGACAATGGATGGGCTGTGTCTGACACTACAGCAGAAGCGCTGAAG GCTGTACTGTTACTGGAAAAGATCTCTAGCAACGTGGTCGGGGATCCAATT
genomic: CAGCAGACAATGGATGGGCTGTGTCTGACACTACAGCAGAAGCGCTGAAGgtcattatgt ... tcatttccagGCTGTACTGTTACTGGAAAAGATCTCTAGCAACGTGGTCGGGGATCCAATT
ctgcataaatttttattttgtctactcttgaaatcttacataatctcatttccagGCTGTACTGTTACTGGAAAAGATCTCTAGCAACGTGGTCGGGGATCCAATTGAAATAGAAAGGCTGCATGATGCTGTTGATTGCCTCCTATCTTTCGTG
atcttac putative branch site (score: 26)
tctcatttcc putative PPT
taaatttttattttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagctcatgcttatacaaaaaattgatcacgatctgttgccagttctgcataaatttttattttgtctactcttgaaatcttacataatctcatttccagGCTGTACTGTTACTGGAAAAGATCTCTAGCAACGTGGTCGGGGATCCAATTGAAATAGAAAGGCTGCATGATGCTGTTGATTGCCTCCTATCTTTCGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - -catgctt
- - - - - - - -caaaaaa
- - - - - - - - - - - - - - - - - tgttgcc
- - - - - - - - - - - - - - - - - - - - - -ttctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcttgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttacat