1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...acacatcatttggtctatgcattatacggagtagcaatcaattattatttatgaacaatggtgtgcatttggttgttaatatttttgttcactcctgtagGGAAGTAAAACTTACTGAGGTTTCTGTGAGTGATAAACTTGAAGGTTTCCGTGCATCTAAAGAG
species | Oryza sativa |
transcript | LOC_Os11g33330.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GCTTCTGGTTACTTTAGTGAGGCCAAGGGATCACAGAAAAAGCAGCATAT GGAAGTAAAACTTACTGAGGTTTCTGTGAGTGATAAACTTGAAGGTTTCCGEST: gi|58663678|gb|CK052364.1|CK052364
genomic: GCTTCTGGTTACTTTAGTGAGGCCAAGGGATCACAGAAAAAGCAGCATATgtgagtatgc ... actcctgtagGGAAGTAAAACTTACTGAGGTTTCTGTGAGTGATAAACTTGAAGGTTTCCG
EST: GCTTCTGGTTACTTTAGTGAGGCCAAGGGATCACAGAAAAAGCAGCATAT GGAAGTAAAACTTACTGAGGTTTCTGTGAGTGATAAACTTGAAGGTTTCCGEST: gi|58680853|gb|CK069540.1|CK069540
genomic: GCTTCTGGTTACTTTAGTGAGGCCAAGGGATCACAGAAAAAGCAGCATATgtgagtatgc ... actcctgtagGGAAGTAAAACTTACTGAGGTTTCTGTGAGTGATAAACTTGAAGGTTTCCG
EST: CTTTA-TGAGGCCAAGGGATCACAGAAAAAGCAGCATAT GGAAGTAAAACTTACTGAGGTTTCTGTGAGTGATAAACTTGAAGGTTTCCGEST: gi|33794779|gb|CF323269.1|CF323269
genomic: CTTTAGTGAGGCCAAGGGATCACAGAAAAAGCAGCATATgtgagtatgc ... actcctgtagGGAAGTAAAACTTACTGAGGTTTCTGTGAGTGATAAACTTGAAGGTTTCCG
EST: GCTTCTGGTTACTTTAGTGAGGCCAAGGGATCACAGAAAAAGCAGCATAT GGAAGTAAAACTTACTGAGGTTTCTGTGAGTGATAAACTTGAAGGTTTCCGEST: gi|66922750|gb|CX109598.1|CX109598
genomic: GCTTCTGGTTACTTTAGTGAGGCCAAGGGATCACAGAAAAAGCAGCATATgtgagtatgc ... actcctgtagGGAAGTAAAACTTACTGAGGTTTCTGTGAGTGATAAACTTGAAGGTTTCCG
EST: GCTTCTGGTTACTTTAGTGAGGCCAAGGGATCACAGAAAAAGCAGCATAT GGAAGTAAAACTTACTGAGGTTTCTGTGAGTGATAAACTTGAAGGTTTCCGEST: gi|88574886|gb|CI666655.1|CI666655
genomic: GCTTCTGGTTACTTTAGTGAGGCCAAGGGATCACAGAAAAAGCAGCATATgtgagtatgc ... actcctgtagGGAAGTAAAACTTACTGAGGTTTCTGTGAGTGATAAACTTGAAGGTTTCCG
EST: GCTTCTGGTTACTTTAGTGAGGCCAAGGGATCACAGAAAAAGCAGCATAT GGAAGTAAAACTTACTGAGGTTTCTGTGAGTGATAAACTTGAAGGTTTCCG
genomic: GCTTCTGGTTACTTTAGTGAGGCCAAGGGATCACAGAAAAAGCAGCATATgtgagtatgc ... actcctgtagGGAAGTAAAACTTACTGAGGTTTCTGTGAGTGATAAACTTGAAGGTTTCCG
tatttatgaacaatggtgtgcatttggttgttaatatttttgttcactcctgtagGGAAGTAAAACTTACTGAGGTTTCTGTGAGTGATAAACTTGAAGGTTTCCGTGCATCTAAAGAG
tgttaat putative branch site (score: 48)
tttttgttcactcct CT-rich tract
ttgttaatatttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acacatcatttggtctatgcattatacggagtagcaatcaattattatttatgaacaatggtgtgcatttggttgttaatatttttgttcactcctgtagGGAAGTAAAACTTACTGAGGTTTCTGTGAGTGATAAACTTGAAGGTTTCCGTGCATCTAAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - -tcatttg
- - - - - - - ctatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - gaacaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgtta