1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtacttgtcccacttatctgatctcacttgactattgtctgacagcctcacaaaagaaaagaaatttttctgacattttttttttgaaaaatgcattattttgacagCCACAAGGGCAACGGGGTGCTGCAAACGGAATAGCTACAACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCT
species | Oryza sativa |
transcript | LOC_Os11g04030.3 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ATAACTATAATTACGGGCACTTCTCTTCTACAAAACAAAGCAGTG CCACAAGGGCAACGGGGTGCTGCAAACGGAATAGCTACAACGGCCATGTCCEST: gi|88841567|gb|CI080823.1|CI080823
genomic: ATAACTATAATTACGGGCACTTCTCTTCTACAAAACAAAGCAGTGgtacttgtcc ... attttgacagCCACAAGGGCAACGGGGTGCTGCAAACGGAATAGCTACAACGGCCATGTCC
EST: ATAACTATAATTACGGGCACTTCTCTTCTACAAAACAAAGCAGTG CCACAAGGGCAACGGGGTGCTGCAAACGGAATAGCTACAACGGCCATGTCCEST: gi|29678071|gb|CB674346.1|CB674346
genomic: ATAACTATAATTACGGGCACTTCTCTTCTACAAAACAAAGCAGTGgtacttgtcc ... attttgacagCCACAAGGGCAACGGGGTGCTGCAAACGGAATAGCTACAACGGCCATGTCC
EST: ATAACTATAATTACGGGCACTTCTTTTTTACAAAACAAAGCAGTG CCACAAGGGCAACGGGGTGCTGCAAACGGAATAGCTACAACGGCCATGTCCEST: gi|86260630|gb|CI066503.1|CI066503
genomic: ATAACTATAATTACGGGCACTTCTCTTCTACAAAACAAAGCAGTGgtacttgtcc ... attttgacagCCACAAGGGCAACGGGGTGCTGCAAACGGAATAGCTACAACGGCCATGTCC
EST: ATAACTATAATTACGGGCACTTCTCTTCTACAAAACAAAGCAGTG CCACAAGGGCAACGGGGTGCTGCAAACGGAATAGCTACAACGGCCATGTCCEST: gi|86494925|gb|CI137558.1|CI137558
genomic: ATAACTATAATTACGGGCACTTCTCTTCTACAAAACAAAGCAGTGgtacttgtcc ... attttgacagCCACAAGGGCAACGGGGTGCTGCAAACGGAATAGCTACAACGGCCATGTCC
EST: ATAACTATAATTACGGGCACTTCTCTTCTACAAAACAAAGCAGTG CCACAAGGGCAACGGGGTGCTGCAAACGGAATAGCTACAACGGCCATGTCCEST: gi|29680055|gb|CB676330.1|CB676330
genomic: ATAACTATAATTACGGGCACTTCTCTTCTACAAAACAAAGCAGTGgtacttgtcc ... attttgacagCCACAAGGGCAACGGGGTGCTGCAAACGGAATAGCTACAACGGCCATGTCC
EST: ATAACTATAATTACGGGCACTTCTCTTCTACAAAACAAAGCAGTG CCACAAGGGCAACGGGGTGCTGCAAACGGAATAGCTACAACGGCCATGTCCEST: gi|86870704|gb|CI323580.1|CI323580
genomic: ATAACTATAATTACGGGCACTTCTCTTCTACAAAACAAAGCAGTGgtacttgtcc ... attttgacagCCACAAGGGCAACGGGGTGCTGCAAACGGAATAGCTACAACGGCCATGTCC
EST: CTCTTCTACAAAACAAAGCAGTT CCACAAGGGCAACGGGGTGCTGCAAACGGAATAGCTACAACGGCCATGTCCEST: gi|89186840|gb|CI052253.1|CI052253
genomic: CTCTTCTACAAAACAAAGCAGTGgtacttgtcc ... attttgacagCCACAAGGGCAACGGGGTGCTGCAAACGGAATAGCTACAACGGCCATGTCC
EST: AACTATAATTACGGGCACTTCTCTTCTACCAAACAAAGCAGTG CCACAAGGGCAACGGGGTGCTGCAAACGGAATAGCTACAACGGCCATGTCCEST: gi|88842694|gb|CI081950.1|CI081950
genomic: AACTATAATTACGGGCACTTCTCTTCTACAAAACAAAGCAGTGgtacttgtcc ... attttgacagCCACAAGGGCAACGGGGTGCTGCAAACGGAATAGCTACAACGGCCATGTCC
EST: AAAACAAAGCAGTG CCACAAGGGCAACGGGGTGCTGCAAACGGAATAGCTACAACGGCCATGTCCEST: gi|87006928|gb|CI275236.1|CI275236
genomic: AAAACAAAGCAGTGgtacttgtcc ... attttgacagCCACAAGGGCAACGGGGTGCTGCAAACGGAATAGCTACAACGGCCATGTCC
EST: ATAACTATAATTACGGGCACTTCTCTTCTACAAAACAAAGCAGTG CCACAAGGGCAACGGGGTGCTGCAAACGGAATAGCTACAACGGCCATGTCCEST: gi|29644402|gb|CB649409.1|CB649409
genomic: ATAACTATAATTACGGGCACTTCTCTTCTACAAAACAAAGCAGTGgtacttgtcc ... attttgacagCCACAAGGGCAACGGGGTGCTGCAAACGGAATAGCTACAACGGCCATGTCC
EST: ATAACTATAATTACGGGCACTTCTCTTCTACAAAACAAAGCAGTG CCACAAGGGCAACGGGGTGCTGCAAACGGAATAGCTACAACGGCCATGTCCEST: gi|87025643|gb|CI250137.1|CI250137
genomic: ATAACTATAATTACGGGCACTTCTCTTCTACAAAACAAAGCAGTGgtacttgtcc ... attttgacagCCACAAGGGCAACGGGGTGCTGCAAACGGAATAGCTACAACGGCCATGTCC
EST: ATAACTATAATTACGGGCACTTCTCTTCTACAAAACAAAGCAGTG CCACAAGGGCAACGGGGTGCTGCAAACGGAATAGCTACAACGGCCATGTCCEST: gi|29679866|gb|CB676141.1|CB676141
genomic: ATAACTATAATTACGGGCACTTCTCTTCTACAAAACAAAGCAGTGgtacttgtcc ... attttgacagCCACAAGGGCAACGGGGTGCTGCAAACGGAATAGCTACAACGGCCATGTCC
EST: ATAACTATAATTACGGGCACTTCTCTTTTACAAAACAAAGCAGTG CCACAAGGGCAACGGGGTGCTGCAAACGGAATAGCTACAACGGCCATGTCCEST: gi|88841121|gb|CI080575.1|CI080575
genomic: ATAACTATAATTACGGGCACTTCTCTTCTACAAAACAAAGCAGTGgtacttgtcc ... attttgacagCCACAAGGGCAACGGGGTGCTGCAAACGGAATAGCTACAACGGCCATGTCC
EST: ATAACTATAATTACGGGCACTTCCCTTCTACAAAACAAAGCAGTG CCACAAGGGCAACGGGGTGCTGCAAACGGAATAGCTACAACGGCCATGTCCEST: gi|89193059|gb|CI050357.1|CI050357
genomic: ATAACTATAATTACGGGCACTTCTCTTCTACAAAACAAAGCAGTGgtacttgtcc ... attttgacagCCACAAGGGCAACGGGGTGCTGCAAACGGAATAGCTACAACGGCCATGTCC
EST: ATAACTATAATTACGGGCACTTCTCTTCTACAAAACAAAGCAGTG CCACAAGGGCAACGGGGTGCTGCAAACGGAATAGCTACAACGGCCATGTCC
genomic: ATAACTATAATTACGGGCACTTCTCTTCTACAAAACAAAGCAGTGgtacttgtcc ... attttgacagCCACAAGGGCAACGGGGTGCTGCAAACGGAATAGCTACAACGGCCATGTCC
aaagaaaagaaatttttctgacattttttttttgaaaaatgcattattttgacagCCACAAGGGCAACGGGGTGCTGCAAACGGAATAGCTACAACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCT
ttctgac putative branch site (score: 2)
ttatttt putative PPT
aaagaaatttttctga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttgtcccacttatctgatctcacttgactattgtctgacagcctcacaaaagaaaagaaatttttctgacattttttttttgaaaaatgcattattttgacagCCACAAGGGCAACGGGGTGCTGCAAACGGAATAGCTACAACGGCCATGTCCTTGTTCAAGGCTGTTGCACCAGCTGGCGCAGGTGTTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG