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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaaagaaaaataaatcataccacgggatagctccagaagtatcatatatatttgtttactgttcttatatactaacaaaattctctaatttttttggcagCTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTGCCACCGAAACGGGGGATCACACAATATCATCCAATTCATTAGAGCAGCC

Basic information

species Oryza sativa
transcript LOC_Os10g39220.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g39220.1 (Oryza sativa), 3'ss of exon 10
lower sequence: GRMZM2G174286_T03 (Zea mays), 3'ss of exon 11
-aaaagaaaaataaatcataccacgggatagctccagaagtatcatatatatttgtttactgttcttatatactaacaaaattctctaatttttttggcagCTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTGCCACCGAAACGGGGGATCACACAATATCATCCAATTCATTAGAGCAGCC-
   ||   |   |   | | |||     |||    | |  ||    |   |  | | | ||  ||  || |||| ||| ||| | |  | |      ||||||||||||||| || ||||||||| ||||||| ||||| ||| |||||||||| || || || |||||||||||||| || || || |||||||| |||  
tggaactgagggagtaccttccagcccttagtcaaacagctaggggaatcaaat-tatccttctccgatttactgacagaatccacctactgcgactgcagCTGGTTGAGATAGTGCCTTCAGCTCTGGTGCTCTTCATTCTACGGAAACTGCCTCCAAAGCGTGGGATCACACAATACCACCCGATCCATTAGAG-AGCAG

upper sequence: LOC_Os10g39220.1 (Oryza sativa), 3'ss of exon 10
lower sequence: GRMZM2G003076_T02 (Zea mays), 3'ss of exon 10
aaaagaaaaataaatcataccacgggatagctccag--aagtatcatatatatttgtt-tactgttcttatatactaacaaaattctctaatttttttggcagCTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTGCCACCGAAACGGGGGATCACACAATATCATCCAATTCATTAGAGCAGCC-
          |||| |          | ||||   |    | |||| ||   |   ||   || |||  || |||| ||| ||||| |  |||      ||||||||||||||| || ||||| ||| ||||||| ||||| ||| |||||||||| || ||||| ||||||||||||||||| ||||| |||||||| |||  
---catgccttaaagcccttgctcaaacagctatggctgggaatcaaattagtaaattacccttttccaatttactgacagaattcacctattgcgactgcagCTGGTTGAGATAGTGCCTTCGGCTCTGGTGCTCTTCATTCTACGGAAACTGCCTCCAAAACGTGGGATCACACAATATCACCCAATCCATTAGAG-AGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89176193|gb|CI043214.1|CI043214
EST:     CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTG                         CTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
genomic: CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTGgtatgtcttg ... tttttggcagCTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
EST: gi|89174101|gb|CI041994.1|CI041994
EST:     CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTG                         CTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
genomic: CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTGgtatgtcttg ... tttttggcagCTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
EST: gi|218492361|gb|FG955401.1|FG955401
EST:     CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTG                         CTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
genomic: CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTGgtatgtcttg ... tttttggcagCTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
EST: gi|89182934|gb|CI045692.1|CI045692
EST:     CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTG                         CTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
genomic: CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTGgtatgtcttg ... tttttggcagCTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
EST: gi|218502314|gb|FG958985.1|FG958985
EST:     CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTG                         CTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
genomic: CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTGgtatgtcttg ... tttttggcagCTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
EST: gi|5002917|gb|AU068026.1|AU068026
EST:     CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTG                         CTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
genomic: CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTGgtatgtcttg ... tttttggcagCTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
EST: gi|87035694|gb|CI190316.1|CI190316
EST:     CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTG                         CTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
genomic: CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTGgtatgtcttg ... tttttggcagCTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
EST: gi|3768123|gb|AU032150.1|AU032150
EST:     CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTG                         CTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
genomic: CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTGgtatgtcttg ... tttttggcagCTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
EST: gi|87035709|gb|CI190331.1|CI190331
EST:     CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTG                         CTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
genomic: CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTGgtatgtcttg ... tttttggcagCTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
EST: gi|29664023|gb|CB660298.1|CB660298
EST:     CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTG                         CTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
genomic: CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTGgtatgtcttg ... tttttggcagCTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
EST: gi|86256146|gb|CI007862.1|CI007862
EST:     CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTG                         CTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
genomic: CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTGgtatgtcttg ... tttttggcagCTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
EST: gi|88534189|gb|CI462888.1|CI462888
EST:     CTGACCTTGATGTTGTGAACCATCCGATTCTGAATTTCTTTTATTACTTG                         CTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
genomic: CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTGgtatgtcttg ... tttttggcagCTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
EST: gi|9865751|gb|AU101501.1|AU101501
EST:     CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTG                         CTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
genomic: CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTGgtatgtcttg ... tttttggcagCTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
EST: gi|11565293|gb|AU165929.1|AU165929
EST:     TGACCTTGATGGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTG                         CTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
genomic: TGACCTTGAT-GTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTGgtatgtcttg ... tttttggcagCTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
EST: gi|11118168|gb|AU163356.1|AU163356
EST:     CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTG                         CTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
genomic: CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTGgtatgtcttg ... tttttggcagCTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
EST: gi|88321401|gb|CI535353.1|CI535353
EST:     CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTG                         CTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
genomic: CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTGgtatgtcttg ... tttttggcagCTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
EST: gi|109711727|gb|CI028897.1|CI028897
EST:     CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTG                         CTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
genomic: CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTGgtatgtcttg ... tttttggcagCTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
EST: gi|89173292|gb|CI041185.1|CI041185
EST:     CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTG                         CTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
genomic: CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTGgtatgtcttg ... tttttggcagCTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
EST: gi|87032470|gb|CI266110.1|CI266110
EST:     CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTG                         CTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
genomic: CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTGgtatgtcttg ... tttttggcagCTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
EST: gi|29663945|gb|CB660220.1|CB660220
EST:     CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTG                         CTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
genomic: CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTGgtatgtcttg ... tttttggcagCTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
EST: gi|89182624|gb|CI113993.1|CI113993
EST:     CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTG                         CTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
genomic: CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTGgtatgtcttg ... tttttggcagCTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
EST: gi|87028641|gb|CI266040.1|CI266040
EST:     CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTG                         CTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
genomic: CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTGgtatgtcttg ... tttttggcagCTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
EST: gi|11173257|gb|AU164690.1|AU164690
EST:     CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTG                         CTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
genomic: CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTGgtatgtcttg ... tttttggcagCTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
EST: gi|87035720|gb|CI190342.1|CI190342
EST:     CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTG                         CTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
genomic: CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTGgtatgtcttg ... tttttggcagCTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
EST: gi|87031400|gb|CI261774.1|CI261774
EST:     CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTG                         CTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
genomic: CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTGgtatgtcttg ... tttttggcagCTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
EST: gi|86501176|gb|CI143809.1|CI143809
EST:     CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTG                         CTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
genomic: CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTGgtatgtcttg ... tttttggcagCTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
EST: gi|2797999|gb|AA751293.1|AA751293
EST:     TGAACCATCCGATTCTGAATTTCTTTTATTACTTG                         CTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
genomic: TGAACCATCCGATTCTGAATTTCTTTTATTACTTGgtatgtcttg ... tttttggcagCTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
EST: gi|44666590|gb|CR280024.1|CR280024
EST:     CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTG                         CTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
genomic: CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTGgtatgtcttg ... tttttggcagCTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
EST: gi|88963823|gb|CI031156.1|CI031156
EST:     CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTG                         CTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGGAAACT
genomic: CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTGgtatgtcttg ... tttttggcagCTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAA-GGAAACT
EST: gi|88834061|gb|CI077542.1|CI077542
EST:     CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTG                         CTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
genomic: CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTGgtatgtcttg ... tttttggcagCTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
EST: gi|88484596|gb|CI421867.1|CI421867
EST:     CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTG                         CTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
genomic: CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTGgtatgtcttg ... tttttggcagCTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
EST: gi|87035684|gb|CI190306.1|CI190306
EST:     CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTG                         CTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
genomic: CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTGgtatgtcttg ... tttttggcagCTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
EST: gi|29663981|gb|CB660256.1|CB660256
EST:     CTGACCTTGATGTTCTGAACCATCCGATTTTGAATTTCTATAATTACTTG                         CTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
genomic: CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTGgtatgtcttg ... tttttggcagCTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
EST: gi|86854988|gb|CI263055.1|CI263055
EST:     CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTG                         CTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
genomic: CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTGgtatgtcttg ... tttttggcagCTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
EST: gi|88215826|gb|CI215675.1|CI215675
EST:     CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTG                         CTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
genomic: CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTGgtatgtcttg ... tttttggcagCTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
EST: gi|86258656|gb|CI065009.1|CI065009
EST:     CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTG                         CTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
genomic: CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTGgtatgtcttg ... tttttggcagCTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
EST: gi|218490976|gb|FG962564.1|FG962564
EST:     CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTG                         CTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
genomic: CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTGgtatgtcttg ... tttttggcagCTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
EST: gi|88203392|gb|CI203241.1|CI203241
EST:     CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTG                         CTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
genomic: CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTGgtatgtcttg ... tttttggcagCTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
EST: gi|29659575|gb|CB655850.1|CB655850
EST:     CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTG                         CTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG
genomic: CTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTGgtatgtcttg ... tttttggcagCTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 66 (upstream exon), 70 (downstream exon)
Score: 36

ATGTGTCTCAACACATTTGATAAAGCAGCTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTGgtatgtcttg ... tttttggcagCTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTGCCACCGAAACGGGGGATCACACAATATCATCCAATTCATTAGAGCAGCC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatatttgtttactgttcttatatactaacaaaattctctaatttttttggcagCTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTGCCACCGAAACGGGGGATCACACAATATCATCCAATTCATTAGAGCAGCC
                                   ttctctaattttttt  CT-rich tract
                ttcttatatactaaca  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aaaagaaaaataaatcataccacgggatagctccagaagtatcatatatatttgtttactgttcttatatactaacaaaattctctaatttttttggcagCTGGTTGAGATCGTACCTTCAGCTTTGGTGCTATTCATCCTAAGGAAACTGCCACCGAAACGGGGGATCACACAATATCATCCAATTCATTAGAGCAGCC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - -aaaaata
- - - - - - - -catacca
- - - - - - - - - - - - - - -gctccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taacaaa