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gtaagctattttatgcaagaaaatatcaacttctcttttccaatatatatcttctgccatacatgtgttcaattgcaattctggggcaagctttataaagtcctgtttttacatgaataataggtttgcttcttattttccactgttatgctgtaccatgcagGGACTTATTACCAAATCCAGAAAGGGCCTGGATCCTGCAGTTGCTCGCTATGCCAGAGGTTTTGGTCCTGAAGAGGTGCAAGATCTCCATGAGGGGGCTA
species | Oryza sativa |
transcript | LOC_Os10g35960.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TAAACAGGAGCGGGGAAGGGCATAATCAATTCTGGGTTCTGGACAAAGAT GGACTTATTACCAAATCCAGAAAGGGCCTGGATCCTGCAGTTGCTCGCTATEST: gi|58673493|gb|CK062179.1|CK062179
genomic: TAAACAGGAGCGGGGAAGGGCATAATCAATTCTGGGTTCTGGACAAAGATgtaagctatt ... taccatgcagGGACTTATTACCAAATCCAGAAAGGGCCTGGATCCTGCAGTTGCTCGCTAT
EST: TAAACAGGAGCGGGGAAGGGCATAATCAATTCTGGGTTCTGGACAAAGAT GGACTTATTACCAAATCCAGAAAGGGCCTGGATCCTGCAGTTGCTCGCTATEST: gi|58665242|gb|CK053928.1|CK053928
genomic: TAAACAGGAGCGGGGAAGGGCATAATCAATTCTGGGTTCTGGACAAAGATgtaagctatt ... taccatgcagGGACTTATTACCAAATCCAGAAAGGGCCTGGATCCTGCAGTTGCTCGCTAT
EST: TAAACAGGAGCGGGGAAGGGCATAATCAATTCTGGGTTCTGGACAAAGAT GGACTTATTACCAAATCCAGAAAGGGCCTGGATCCTGCAGTTGCTCGCTATEST: gi|58601869|gb|CK012397.1|CK012397
genomic: TAAACAGGAGCGGGGAAGGGCATAATCAATTCTGGGTTCTGGACAAAGATgtaagctatt ... taccatgcagGGACTTATTACCAAATCCAGAAAGGGCCTGGATCCTGCAGTTGCTCGCTAT
EST: TAAACAGGAGCGGGGAAGGGCATAATCAATTCTGGGTTCTGGACGAAGAT GGACTTATTACCAAATCCAGAAAGGGCCTGGATCCTGCAGTTGCTCGCTATEST: gi|29678813|gb|CB675088.1|CB675088
genomic: TAAACAGGAGCGGGGAAGGGCATAATCAATTCTGGGTTCTGGACAAAGATgtaagctatt ... taccatgcagGGACTTATTACCAAATCCAGAAAGGGCCTGGATCCTGCAGTTGCTCGCTAT
EST: TAAACAGGAGCGGGGAAGGGCATAATCAATTCTGGGTTCTGGACAAAGAT GGACTTATTACCAAATCCAGAAAGGGCCTGGATCCTGCAGTTGCTCGCTAT
genomic: TAAACAGGAGCGGGGAAGGGCATAATCAATTCTGGGTTCTGGACAAAGATgtaagctatt ... taccatgcagGGACTTATTACCAAATCCAGAAAGGGCCTGGATCCTGCAGTTGCTCGCTAT
ttacatgaataataggtttgcttcttattttccactgttatgctgtaccatgcagGGACTTATTACCAAATCCAGAAAGGGCCTGGATCCTGCAGTTGCTCGCTATGCCAGAGGTTTTGGTCCTGAAGAGGTGCAAGATCTCCATGAGGGGGCTA
ttcttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctattttatgcaagaaaatatcaacttctcttttccaatatatatcttctgccatacatgtgttcaattgcaattctggggcaagctttataaagtcctgtttttacatgaataataggtttgcttcttattttccactgttatgctgtaccatgcagGGACTTATTACCAAATCCAGAAAGGGCCTGGATCCTGCAGTTGCTCGCTATGCCAGAGGTTTTGGTCCTGAAGAGGTGCAAGATCTCCATGAGGGGGCTA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA