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gttgaaaactattcatataatgcacatttccttgtatattcacgagatacttttttttaacaggttttgtttgtgaatttgcagTTCATCAGAGATGGTCCTGTGATAGCTTTCTTTTACTGGACATCAAACTTTCATCTTTTTGAATTCTTTAGGCGGTTGAAGCTTCCTGATTAGTTTCAGA
species | Oryza sativa |
transcript | LOC_Os10g34400.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TCCAAAACCCTCGTTGGGTTGATGGCGAGCTTTTGATACTAGATGGAAAG TTCATCAGAGATGGTCCTGTGATAGCTTTCTTTTACTGGACATCAAACTTTEST: gi|27546499|gb|CA764724.2|CA764724
genomic: TCCAAAACCCTCGTTGGGTTGATGGCGAGCTTTTGATACTAGATGGAAAGgttgaaaact ... gaatttgcagTTCATCAGAGATGGTCCTGTGATAGCTTTCTTTTACTGGACATCAAACTTT
EST: TCCAAAATCCTCGTTGGGTTGATGGCGAGCTTTTGATACTAGATGGAAAG TTCATCAGAGATGGTCCTGTGATAGCTTTCTTTTACTGGACATCAAACTTTEST: gi|29659521|gb|CB655796.1|CB655796
genomic: TCCAAAACCCTCGTTGGGTTGATGGCGAGCTTTTGATACTAGATGGAAAGgttgaaaact ... gaatttgcagTTCATCAGAGATGGTCCTGTGATAGCTTTCTTTTACTGGACATCAAACTTT
EST: TCCAAAACCCTCGTTGGGTTGATGGCGAGCTTTTGATACTAGATGGAAAG TTCATCAGAGATGGTCCTGTGATAGCTTTCTTTTACTGGACATCAAACTTTEST: gi|29628476|gb|CB633487.1|CB633487
genomic: TCCAAAACCCTCGTTGGGTTGATGGCGAGCTTTTGATACTAGATGGAAAGgttgaaaact ... gaatttgcagTTCATCAGAGATGGTCCTGTGATAGCTTTCTTTTACTGGACATCAAACTTT
EST: TCCAAAATCCTCGTTGGGTTGATGGCGAGCTTTTGATACTAGATGGAAAG TTCATCAGAGATGGTCCTGTGATAGCTTTCTTTTACTGGACATCAAACTTTEST: gi|33684425|gb|CF312664.1|CF312664
genomic: TCCAAAACCCTCGTTGGGTTGATGGCGAGCTTTTGATACTAGATGGAAAGgttgaaaact ... gaatttgcagTTCATCAGAGATGGTCCTGTGATAGCTTTCTTTTACTGGACATCAAACTTT
EST: TCCAAAACCCTCGTTGGGTTGATGGCGAGCTTTTGATACTAGATGGAAAG TTCATCAGAGATGGTCCTGTGGTAGCTTTCTTTTACTGGACATCAAACTTTEST: gi|218489246|gb|FG956746.1|FG956746
genomic: TCCAAAACCCTCGTTGGGTTGATGGCGAGCTTTTGATACTAGATGGAAAGgttgaaaact ... gaatttgcagTTCATCAGAGATGGTCCTGTGATAGCTTTCTTTTACTGGACATCAAACTTT
EST: TCCAAAACCCTCGTTGGGTTGATGGCGAGCTTTTGATACTAGATGGAAAG -NCATCAGAGATGGTCCTGTGATAGCTTTCTTTTACTGGACATCAAACTTT
genomic: TCCAAAACCCTCGTTGGGTTGATGGCGAGCTTTTGATACTAGATGGAAAGgttgaaaact ... gaatttgcagTTCATCAGAGATGGTCCTGTGATAGCTTTCTTTTACTGGACATCAAACTTT
ccttgtatattcacgagatacttttttttaacaggttttgtttgtgaatttgcagTTCATCAGAGATGGTCCTGTGATAGCTTTCTTTTACTGGACATCAAACTTTCATCTTTTTGAATTCTTTAGGCGGTTGAAGCTTCCTGATTAGTTTCAGA
ttttaac putative branch site (score: 18)
agatacttttttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgaaaactattcatataatgcacatttccttgtatattcacgagatacttttttttaacaggttttgtttgtgaatttgcagTTCATCAGAGATGGTCCTGTGATAGCTTTCTTTTACTGGACATCAAACTTTCATCTTTTTGAATTCTTTAGGCGGTTGAAGCTTCCTGATTAGTTTCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC