1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tctctgctttcttctaattttgttacatcagctacatatgatactaagagctaatctctcagtatcattacaaattttgagtcatttcctgcctttgtagATTGATGATGATGAAGATTGGTTTCCTGAAGACCCAATTGAAGCTTTTAAGGTTATGCGTGAGACAAGGTTGTTCGATGTGTCAGATATGTATACTACTG
species | Oryza sativa |
transcript | LOC_Os10g32540.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ATCTAGAAAAGACATCTGTTTCATCAAAGAAGTCAAAAAGGGTACCTGAG ATTGATGATGATGAAGATTGGTTTCCTGAAGACCCAATTGAAGCTTTTAAGEST: gi|58682349|gb|CK071036.1|CK071036
genomic: ATCTAGAAAAGACATCTGTTTCATCAAAGAAGTCAAAAAGGGTACCTGAGgtatgaaagt ... gcctttgtagATTGATGATGATGAAGATTGGTTTCCTGAAGACCCAATTGAAGCTTTTAAG
EST: TCTAGAAAAGACAGTCTGTTTCATCAAAGAAGTCAAAAAGGGTACCTGAG A-TGATGATGATGAAGATNGGTTTCCTGAAGACCCAATTGAAGCTTTTAAGEST: gi|88673142|gb|CI727256.1|CI727256
genomic: TCTAGAAAAGACA-TCTGTTTCATCAAAGAAGTCAAAAAGGGTACCTGAGgtatgaaagt ... gcctttgtagATTGATGATGATGAAGATTGGTTTCCTGAAGACCCAATTGAAGCTTTTAAG
EST: ATCTAGAAAAGACATCTGTTTCATCAAAGAAGTCAAAAAGGGTACCTGAG ATTGATGATGATGAAGATTGGTTTCCTGAAGACCCAATTGAAGCTTTTAAG
genomic: ATCTAGAAAAGACATCTGTTTCATCAAAGAAGTCAAAAAGGGTACCTGAGgtatgaaagt ... gcctttgtagATTGATGATGATGAAGATTGGTTTCCTGAAGACCCAATTGAAGCTTTTAAG
aagagctaatctctcagtatcattacaaattttgagtcatttcctgcctttgtagATTGATGATGATGAAGATTGGTTTCCTGAAGACCCAATTGAAGCTTTTAAGGTTATGCGTGAGACAAGGTTGTTCGATGTGTCAGATATGTATACTACTG
agctaat putative branch site (score: 19)
tcatttcctgccttt putative PPT
tatcattacaaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctctgctttcttctaattttgttacatcagctacatatgatactaagagctaatctctcagtatcattacaaattttgagtcatttcctgcctttgtagATTGATGATGATGAAGATTGGTTTCCTGAAGACCCAATTGAAGCTTTTAAGGTTATGCGTGAGACAAGGTTGTTCGATGTGTCAGATATGTATACTACTG
- -ctgcttt
- - - - - - - - - - - - - - cagctac
- - - - - - - - - - - - - - - - - - - tgatact