1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...cacacaggtcacttatatcacttcttaatgcaatgatacacaatgttccctaaaaaaagacacagcaacattttagctaactttactgtattttgtgcagCGCTGTTATGCCAGCTTGCAGCACTGCGGTCATTTTCACCAGAAAGATTGCAATATTGGAGGGAAAGAGAATCTGGCATGAGCACTCTAGCTTATTTTCT
species | Oryza sativa |
transcript | LOC_Os10g30610.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AGATGATACATTCGGTGTAGCTTCATATGGATATACCATAATTGCAGTCT CGCTGTTATGCCAGCTTGCAGCACTGCGGTCATTTTCACCAGAAAGATTGCEST: gi|29637152|gb|CB642161.1|CB642161
genomic: AGATGATACATTCGGTGTAGCTTCATATGGATATACCATAATTGCAGTCTgtaagtcagt ... ttttgtgcagCGCTGTTATGCCAGCTTGCAGCACTGCGGTCATTTTCACCAGAAAGATTGC
EST: AGATGATACATTCGGTGTAGCTTCATATGGATATACCATAATTGCAGTCT CGCTGTTATGCCAGCTTGCAGCACTGCGGTCATTTTCACCAGAAAGATTGC
genomic: AGATGATACATTCGGTGTAGCTTCATATGGATATACCATAATTGCAGTCTgtaagtcagt ... ttttgtgcagCGCTGTTATGCCAGCTTGCAGCACTGCGGTCATTTTCACCAGAAAGATTGC
ttccctaaaaaaagacacagcaacattttagctaactttactgtattttgtgcagCGCTGTTATGCCAGCTTGCAGCACTGCGGTCATTTTCACCAGAAAGATTGCAATATTGGAGGGAAAGAGAATCTGGCATGAGCACTCTAGCTTATTTTCT
agctaac putative branch site (score: 9)
taaaaaaaga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacacaggtcacttatatcacttcttaatgcaatgatacacaatgttccctaaaaaaagacacagcaacattttagctaactttactgtattttgtgcagCGCTGTTATGCCAGCTTGCAGCACTGCGGTCATTTTCACCAGAAAGATTGCAATATTGGAGGGAAAGAGAATCTGGCATGAGCACTCTAGCTTATTTTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA