1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...attaaattgtgttggtttgagccttttgattttaaagcattccatggtataaacaaaacaactgaatataaaccatcctgatgtgcattatttgtctcagAATTCAAAGGTGGTTCTTCCCCTATGACTACCAAGTAATCCAGGAGATGCACAGGGATGAACCCCACGAGTACAGCAGGATACAACTTCCAGAGACAAGC
species | Oryza sativa |
transcript | LOC_Os10g27220.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CTATTGCTTGTTCCAATCATCGNTCTCTTTGGCGGCTTCTTATATT-ATC AATTCAAAGGTGGTCCTTCCCCTATGEST: gi|58597891|gb|CK008419.1|CK008419
genomic: CTATTGCTTGTTCCAATCATCGCTCTCTTTGGCGACTTCTTATATTTATCgtaagatacc ... tttgtctcagAATTCAAAGGTGGTTCTTCCCCTATG
EST: CTATTGCTTGTTCCAATCATCGCTCTCTTTGGCGACTTCTTATATTTATC AATTCAAAGGTGGTTCTTCCCCTATGACTACCAAGTAATCCAGGAGATGCAEST: gi|86494714|gb|CI137347.1|CI137347
genomic: CTATTGCTTGTTCCAATCATCGCTCTCTTTGGCGACTTCTTATATTTATCgtaagatacc ... tttgtctcagAATTCAAAGGTGGTTCTTCCCCTATGACTACCAAGTAATCCAGGAGATGCA
EST: CTATTGCTTGTTCCAATCATCGCTCTCTTTGGCGACTTCTTATATTTATC AATTCAAAGGTGGTTCTTCCCCTATGACTACCAAGTAATCCAGGAGATGCA
genomic: CTATTGCTTGTTCCAATCATCGCTCTCTTTGGCGACTTCTTATATTTATCgtaagatacc ... tttgtctcagAATTCAAAGGTGGTTCTTCCCCTATGACTACCAAGTAATCCAGGAGATGCA
ggtataaacaaaacaactgaatataaaccatcctgatgtgcattatttgtctcagAATTCAAAGGTGGTTCTTCCCCTATGACTACCAAGTAATCCAGGAGATGCACAGGGATGAACCCCACGAGTACAGCAGGATACAACTTCCAGAGACAAGC
tcctgat putative branch site (score: 27)
tttgtctc putative PPT
tgaatataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attaaattgtgttggtttgagccttttgattttaaagcattccatggtataaacaaaacaactgaatataaaccatcctgatgtgcattatttgtctcagAATTCAAAGGTGGTTCTTCCCCTATGACTACCAAGTAATCCAGGAGATGCACAGGGATGAACCCCACGAGTACAGCAGGATACAACTTCCAGAGACAAGC
- - - -tgtgttg
- - - - - - - - - - - - - - - - - - gcattcc
- - - - - - - - - - - - - - - - - - - - - - - - - aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgcatt