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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacaactctgagctggaactgcactcttcaaactaatcttatcgcactcttcaggtactaatagtttccccacagGAATGCTGAAGCACAACTGGGTTTGGATCTATTTGAACAATTAAAAATAGACAGTATTGACCTCAATCCCACAATCGTTGGTTGTCTTACTG

Basic information

species Oryza sativa
transcript LOC_Os10g10170.4
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g10170.4 (Oryza sativa), 3'ss of exon 10
lower sequence: GRMZM2G018929_T02 (Zea mays), 3'ss of exon 5
gtaacaactctgagctggaactgcactcttcaaactaatcttatcgcactcttcaggtactaatagtttccccacagGAATGCTGAAGCACAACTGGGTTTGGATCTATTTGAACAATTAAAAATAGACAGTATTGACCTCAATCCCACAATCGTTGGTTGTCTTACTG
|||| || |||||||  ||||| |||  |||||  |||| |||| |   || |||| |||||| || |  |    || |||| |||||||||||| ||||||||| | ||||||||||||||||| ||  | |||||| ||||||| || ||  |||||| ||||||||
gtaataa-tctgagcatgaacttcacctttcaatttaat-ttatggtgttcgtcagatactaacagctgacatgtagAAATGGTGAAGCACAACTAGGTTTGGATTTGTTTGAACAATTAAAAATGGATGGCATTGACATCAATCCGACCATAATTGGTTCTCTTACTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58691402|gb|CK080089.1|CK080089
EST:     GTCTGTCCAAATATGATAACCTATTCGGTGTTATTTGTGGCTTGTGAAAG                         GAATGCTGAAGCACAACTGGGTTTGGATCTATTTGAACAATTAAAAATAGA
genomic: GTCTGTCCAAATATGATAACCTATTCGGTGTTATTTGTGGCTTGTGAAAGgtaacaactc ... ttccccacagGAATGCTGAAGCACAACTGGGTTTGGATCTATTTGAACAATTAAAAATAGA
EST: gi|58695106|gb|CK083793.1|CK083793
EST:     GTCTGTCCAAATATGATAACCTATTCGGTGTTATTTGTGGCTTGTGAAAG                         GAATGCTGAAGCACAACTGGGTTTGGATCTATTTGAACAATTAAAAATAGA
genomic: GTCTGTCCAAATATGATAACCTATTCGGTGTTATTTGTGGCTTGTGAAAGgtaacaactc ... ttccccacagGAATGCTGAAGCACAACTGGGTTTGGATCTATTTGAACAATTAAAAATAGA
EST: gi|88405888|gb|CI591283.1|CI591283
EST:     TATTCGGTGTTATTTGTGGCTTGTGAAAG                         GAATGCTGAAGCACAACTGGGTTTGGATCTATTTGAACAATTAAAAATAGA
genomic: TATTCGGTGTTATTTGTGGCTTGTGAAAGgtaacaactc ... ttccccacagGAATGCTGAAGCACAACTGGGTTTGGATCTATTTGAACAATTAAAAATAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcactcttcaaactaatcttatcgcactcttcaggtactaatagtttccccacagGAATGCTGAAGCACAACTGGGTTTGGATCTATTTGAACAATTAAAAATAGACAGTATTGACCTCAATCCCACAATCGTTGGTTGTCTTACTG
                                   tactaat  putative branch site (score: 1)
                                            tttccccac  putative PPT
             taatcttat  TA-rich tract