1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...cgcttgtgttgattctgattaccaacaggcaacagttgtggctacttaactcggaatagggttatcatatcttagcttgaaccctgcatctttgtttcagGCAATCAAGGGAAAAGAGTCCGGCGAGTCCGTTGTGGAGTATGACTATCTGCCATACTTCTACTCCCGGTCATTCGACCTGGGATGGCAATTCTACGGCG
species | Oryza sativa |
transcript | LOC_Os09g39380.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GAGTGGAACATGTTGACCATGCTAGGAAGTCTGCAGAGCAGGCTGTAAAG GCAATCAAGGGAAAAGAGTCCGGCGAGTCCGTTGTGGAGTATGACTATCTGEST: gi|86849232|gb|CI297724.1|CI297724
genomic: GAGTGGAACATGTTGACCATGCTAGGAAGTCTGCAGAGCAGGCTGTAAAGgtgaggccat ... tttgtttcagGCAATCAAGGGAAAAGAGTCCGGCGAGTCCGTTGTGGAGTATGACTATCTG
EST: GAGTGGAACATGTTGACCATGCTAGGAAGTCTGCAGAGCAGGCTGTAAAG GCAATCAAGGGAAAAGAGTCCGGCGAGTCCGTTGTGGAGTATGACTATCTGEST: gi|58686362|gb|CK075049.1|CK075049
genomic: GAGTGGAACATGTTGACCATGCTAGGAAGTCTGCAGAGCAGGCTGTAAAGgtgaggccat ... tttgtttcagGCAATCAAGGGAAAAGAGTCCGGCGAGTCCGTTGTGGAGTATGACTATCTG
EST: GAGTGGAACATGTTGACCATGCTAGGAAGTCTGCAGAGCAGGCTGTAAAG GCAATCAAGGGAAAAGAGTCCGGCGAGTCCGTTGTGGAGTATGACTATCTGEST: gi|38477357|gb|CF961490.1|CF961490
genomic: GAGTGGAACATGTTGACCATGCTAGGAAGTCTGCAGAGCAGGCTGTAAAGgtgaggccat ... tttgtttcagGCAATCAAGGGAAAAGAGTCCGGCGAGTCCGTTGTGGAGTATGACTATCTG
EST: GAGTGGAACATGTTGACCATGCTAGGAAGTCTGCAGAGCAGGCTGTAAAG GCAATCAAGGGAAAAGAGTCCGGCGAGTCCGTTGTGGAGTATGACTATCTGEST: gi|86499986|gb|CI142619.1|CI142619
genomic: GAGTGGAACATGTTGACCATGCTAGGAAGTCTGCAGAGCAGGCTGTAAAGgtgaggccat ... tttgtttcagGCAATCAAGGGAAAAGAGTCCGGCGAGTCCGTTGTGGAGTATGACTATCTG
EST: GTGGAACATGTTGACCATGCTAGGAAGTCTGCAGAGCAGCCTGTAAAG GCAATCAAGGGAAAAGAGTCCGGCGAGTCCGTTGTGGAGTATGACTATCTG
genomic: GTGGAACATGTTGACCATGCTAGGAAGTCTGCAGAGCAGGCTGTAAAGgtgaggccat ... tttgtttcagGCAATCAAGGGAAAAGAGTCCGGCGAGTCCGTTGTGGAGTATGACTATCTG
ttaactcggaatagggttatcatatcttagcttgaaccctgcatctttgtttcagGCAATCAAGGGAAAAGAGTCCGGCGAGTCCGTTGTGGAGTATGACTATCTGCCATACTTCTACTCCCGGTCATTCGACCTGGGATGGCAATTCTACGGCG
acttaac putative branch site (score: 132)
tctttgtttc putative PPT
ttatcatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgcttgtgttgattctgattaccaacaggcaacagttgtggctacttaactcggaatagggttatcatatcttagcttgaaccctgcatctttgtttcagGCAATCAAGGGAAAAGAGTCCGGCGAGTCCGTTGTGGAGTATGACTATCTGCCATACTTCTACTCCCGGTCATTCGACCTGGGATGGCAATTCTACGGCG
- - tgtgttg
- - - - - - ttctgat
- - - - - - - - - - - - -caggcaa
- - - - - - - - - - - - - - - - - - - -ggctact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcttgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctgca