1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaataagtttgaatttaaaattttaggataagcatactttgtgttatattgatctgtgccattgagcttttgattggattccatgcagTGTCATTCCTGTTTTTCGGGAGCAAGCTGAGCAACTATTGAACTCTTCCGGGATGTCTGCAGTTGATCTACTAGCCAAAGCACTTGCGAAGGCAGTT
species | Oryza sativa |
transcript | LOC_Os09g34910.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GCAGCAGAAGCCATTTCCAGTGTTTCAGACAG TGTCATTCCTGTTTTTCGGGAGCAAGCTGAGCAACTATTGAACTCTTCCGGEST: gi|29637933|gb|CB642942.1|CB642942
genomic: GCAGCAGAAGCCATTTCCAGTGTTTCAGACAGgtaataagtt ... ttccatgcagTGTCATTCCTGTTTTTCGGGAGCAAGCTGAGCAACTATTGAACTCTTCCGG
EST: CTGAAGCAGCAGAAGCCATTTCCAGTGTTTCAGACAG TGTCATTCCTGTTTTTCGGGAGCAAGCTGAGCAACTATTGAACTCTTCCGGEST: gi|4969173|gb|AU066077.1|AU066077
genomic: CTGAAGCAGCAGAAGCCATTTCCAGTGTTTCAGACAGgtaataagtt ... ttccatgcagTGTCATTCCTGTTTTTCGGGAGCAAGCTGAGCAACTATTGAACTCTTCCGG
EST: CAATCTGCTGGTACTNAAGCAGCAGAAGC-ATTTCCAGTGTTTCAGACAG TGTCATTCCTGTTTTTCGGGEST: gi|29672112|gb|CB668387.1|CB668387
genomic: CAATCTGCTGGTACTGAAGCAGCAGAAGCCATTTCCAGTGTTTCAGACAGgtaataagtt ... ttccatgcagTGTCATTCCTGTTTTTCGGG
EST: CAATCTGCTGGTACTGAAGCAGCAGAAGCCATTTCCAGTGTTTCAGACAG TGTCATTCCTGTTTTTCGGGAGCAAGCTGAGCAACTATTGAACTCTTCCGGEST: gi|218486017|gb|FG967018.1|FG967018
genomic: CAATCTGCTGGTACTGAAGCAGCAGAAGCCATTTCCAGTGTTTCAGACAGgtaataagtt ... ttccatgcagTGTCATTCCTGTTTTTCGGGAGCAAGCTGAGCAACTATTGAACTCTTCCGG
EST: CAATCTGCTGGTACTGAAGCAGCAGAAGCCATTTCCAGTGTTTCAGACAG TGTCATTCCTGTTTTTCGGGAGCAAGCTGAGCAACTATTGAACTCTTCCGGEST: gi|218497196|gb|FG952158.1|FG952158
genomic: CAATCTGCTGGTACTGAAGCAGCAGAAGCCATTTCCAGTGTTTCAGACAGgtaataagtt ... ttccatgcagTGTCATTCCTGTTTTTCGGGAGCAAGCTGAGCAACTATTGAACTCTTCCGG
EST: CAATCTGCTGGTACTGAAGCAGCAGAAGCCATTTCCAGTGTTTCAGACAG TGTCATTCCTGTTTTTCGGGAGCAAGCTGAGCAACTATTGA-CTCTCTCCGEST: gi|218480278|gb|FG966414.1|FG966414
genomic: CAATCTGCTGGTACTGAAGCAGCAGAAGCCATTTCCAGTGTTTCAGACAGgtaataagtt ... ttccatgcagTGTCATTCCTGTTTTTCGGGAGCAAGCTGAGCAACTATTGAACTCT-TCCG
EST: TCTGCTGGTACTGAAGCAGCAGAAGCCATTTCCACGTGTTTCAGAAACAG TGTCATTCCTGTTTTEST: gi|218489960|gb|FG943973.1|FG943973
genomic: TCTGCTGGTACTGAAGCAGCAGAAGCCATTTCCA-GTGTTTCAGA--CAGgtaataagtt ... ttccatgcagTGTCATTCCTGTTTT
EST: CAATCTGCTGGTACTGAAGCAGCAGAAGCCATTTCCAGTGTTTCAGACAG TGTCATTCCTGTTTTTCGGGAGCAAGCTGAGCAACTATTGAACTCTTCCGGEST: gi|29628389|gb|CB633400.1|CB633400
genomic: CAATCTGCTGGTACTGAAGCAGCAGAAGCCATTTCCAGTGTTTCAGACAGgtaataagtt ... ttccatgcagTGTCATTCCTGTTTTTCGGGAGCAAGCTGAGCAACTATTGAACTCTTCCGG
EST: AGCAGCAGAAGCCATTTCCAGTGTTTCAGACAG TGTCATTCCTGTTTTTCGGGAGCAAGCTGAGCAACTATTGAACTCTTCCGGEST: gi|87023726|gb|CI286477.1|CI286477
genomic: AGCAGCAGAAGCCATTTCCAGTGTTTCAGACAGgtaataagtt ... ttccatgcagTGTCATTCCTGTTTTTCGGGAGCAAGCTGAGCAACTATTGAACTCTTCCGG
EST: CAATCTGCTGGTACTGAAGCAGCAGAAGCCATTTCCAGTGTTTCAGACAG TGTCATTCCTGTTTTTCGGGAGCAAGCTGAGCAACTATTGAACTCTTCCGGEST: gi|58686669|gb|CK075356.1|CK075356
genomic: CAATCTGCTGGTACTGAAGCAGCAGAAGCCATTTCCAGTGTTTCAGACAGgtaataagtt ... ttccatgcagTGTCATTCCTGTTTTTCGGGAGCAAGCTGAGCAACTATTGAACTCTTCCGG
EST: CAATCTGCTGGTACTGAAGCAGCAGAAGCCATTTCCAGTGTTTCAGACAG TGTCATTCCTGTTTTTCGGGAGCAAGCTGAGCAACTATTGAACTCTTCCGGEST: gi|218502440|gb|FG963347.1|FG963347
genomic: CAATCTGCTGGTACTGAAGCAGCAGAAGCCATTTCCAGTGTTTCAGACAGgtaataagtt ... ttccatgcagTGTCATTCCTGTTTTTCGGGAGCAAGCTGAGCAACTATTGAACTCTTCCGG
EST: CAATCTGCTGGTACTGAAGCAGCAGAAGCCATTTCCAGTGTTTCAGACAG TGTCATTCCTGTTTTTCGGGAGCAAGCTGAGCAATTATTGAACTCTTCCGGEST: gi|29662539|gb|CB658814.1|CB658814
genomic: CAATCTGCTGGTACTGAAGCAGCAGAAGCCATTTCCAGTGTTTCAGACAGgtaataagtt ... ttccatgcagTGTCATTCCTGTTTTTCGGGAGCAAGCTGAGCAACTATTGAACTCTTCCGG
EST: GAAGCAGCAGAAGCCATTTCCAGTGTTTCAGACAG TGTCATTCCTGTTTTTCGGGAGCAAGCTGAGCAACTATTGAACTCTTCCGGEST: gi|218487667|gb|FG948994.1|FG948994
genomic: GAAGCAGCAGAAGCCATTTCCAGTGTTTCAGACAGgtaataagtt ... ttccatgcagTGTCATTCCTGTTTTTCGGGAGCAAGCTGAGCAACTATTGAACTCTTCCGG
EST: CAATCTGCTGGTACTGAAGCAGCAGAAGCCATTTCCAGTGTTTCAGACAG TGTCATTCCTGTTTTTCGGGAGCAAGCTGAGCAACTATTGAACTCTTCCGGEST: gi|218495874|gb|FG947056.1|FG947056
genomic: CAATCTGCTGGTACTGAAGCAGCAGAAGCCATTTCCAGTGTTTCAGACAGgtaataagtt ... ttccatgcagTGTCATTCCTGTTTTTCGGGAGCAAGCTGAGCAACTATTGAACTCTTCCGG
EST: CAATCTGCTGGTACTGAAGCAGCAGAAGCCATTTCCAGTGTTTCAGACAG TGTCATTCCTGTTTTTCGGGAGCAAGCTGAGCAACTATTGAACTCTTCCGGEST: gi|29637932|gb|CB642941.1|CB642941
genomic: CAATCTGCTGGTACTGAAGCAGCAGAAGCCATTTCCAGTGTTTCAGACAGgtaataagtt ... ttccatgcagTGTCATTCCTGTTTTTCGGGAGCAAGCTGAGCAACTATTGAACTCTTCCGG
EST: CAATCTGCTGGTACTGAAGCAGCAGAAGCCATTTCCAGTGTTTCAGACAG TGTCATTCCTGEST: gi|29672113|gb|CB668388.1|CB668388
genomic: CAATCTGCTGGTACTGAAGCAGCAGAAGCCATTTCCAGTGTTTCAGACAGgtaataagtt ... ttccatgcagTGTCATTCCTG
EST: GCAGCAGAAGCCATTTCCAGTGTTTCAGACAG TGTCATTCCTGTTTTTCGGGAGCAAGCTGAGCAACTATTGAACTCTTCCGG
genomic: GCAGCAGAAGCCATTTCCAGTGTTTCAGACAGgtaataagtt ... ttccatgcagTGTCATTCCTGTTTTTCGGGAGCAAGCTGAGCAACTATTGAACTCTTCCGG
atactttgtgttatattgatctgtgccattgagcttttgattggattccatgcagTGTCATTCCTGTTTTTCGGGAGCAAGCTGAGCAACTATTGAACTCTTCCGGGATGTCTGCAGTTGATCTACTAGCCAAAGCACTTGCGAAGGCAGTT
ttatattgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaataagtttgaatttaaaattttaggataagcatactttgtgttatattgatctgtgccattgagcttttgattggattccatgcagTGTCATTCCTGTTTTTCGGGAGCAAGCTGAGCAACTATTGAACTCTTCCGGGATGTCTGCAGTTGATCTACTAGCCAAAGCACTTGCGAAGGCAGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG